Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01795 and ECD_01796 are separated by 74 nucleotides ECD_01796 and ECD_01797 are separated by 158 nucleotides ECD_01797 and ECD_01798 are separated by 142 nucleotides ECD_01798 and ECD_01799 are separated by 176 nucleotides
ECD_01795: ECD_01795 - putative inner membrane protein, at 1,853,987 to 1,854,274
_01795
ECD_01796: ECD_01796 - regulatory peptide for PhoPQ, feedback inhibition, at 1,854,349 to 1,854,492
_01796
ECD_01797: ECD_01797 - uncharacterized protein, at 1,854,651 to 1,854,890
_01797
ECD_01798: ECD_01798 - KDG regulon transcriptional repressor, at 1,855,033 to 1,855,824
_01798
ECD_01799: ECD_01799 - putative transporter, at 1,856,001 to 1,857,374
_01799
Position (kb)
1855
1856 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1854.206 kb on - strand, within ECD_01795 at 1854.225 kb on - strand, within ECD_01795 at 1854.225 kb on - strand, within ECD_01795 at 1854.305 kb on - strand at 1854.425 kb on - strand, within ECD_01796 at 1854.512 kb on - strand at 1854.512 kb on - strand at 1854.517 kb on - strand at 1854.517 kb on - strand at 1854.517 kb on - strand at 1854.517 kb on - strand at 1854.519 kb on - strand at 1854.519 kb on - strand at 1854.519 kb on - strand at 1854.559 kb on - strand at 1854.774 kb on + strand, within ECD_01797 at 1854.774 kb on + strand, within ECD_01797 at 1855.104 kb on - strand at 1855.277 kb on - strand, within ECD_01798 at 1855.318 kb on - strand, within ECD_01798 at 1855.428 kb on - strand, within ECD_01798 at 1855.443 kb on - strand, within ECD_01798 at 1855.447 kb on - strand, within ECD_01798 at 1855.447 kb on - strand, within ECD_01798 at 1855.447 kb on - strand, within ECD_01798 at 1855.474 kb on - strand, within ECD_01798 at 1855.504 kb on - strand, within ECD_01798 at 1855.670 kb on - strand, within ECD_01798 at 1856.338 kb on + strand, within ECD_01799 at 1856.654 kb on + strand, within ECD_01799
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,854,206 - ECD_01795 0.76 -1.0 1,854,225 - ECD_01795 0.83 -0.3 1,854,225 - ECD_01795 0.83 +0.1 1,854,305 - +1.5 1,854,425 - ECD_01796 0.53 -2.8 1,854,512 - -0.3 1,854,512 - -0.2 1,854,517 - -0.1 1,854,517 - +0.0 1,854,517 - -0.0 1,854,517 - -0.2 1,854,519 - -0.7 1,854,519 - -0.5 1,854,519 - +0.6 1,854,559 - +0.6 1,854,774 + ECD_01797 0.51 +0.4 1,854,774 + ECD_01797 0.51 +0.8 1,855,104 - -0.1 1,855,277 - ECD_01798 0.31 -0.8 1,855,318 - ECD_01798 0.36 -0.7 1,855,428 - ECD_01798 0.50 -1.1 1,855,443 - ECD_01798 0.52 -0.3 1,855,447 - ECD_01798 0.52 -1.2 1,855,447 - ECD_01798 0.52 -0.6 1,855,447 - ECD_01798 0.52 -0.5 1,855,474 - ECD_01798 0.56 -0.3 1,855,504 - ECD_01798 0.59 -0.0 1,855,670 - ECD_01798 0.80 -0.3 1,856,338 + ECD_01799 0.25 +0.2 1,856,654 + ECD_01799 0.48 -0.3
Or see this region's nucleotide sequence