Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01758 and ECD_01759 overlap by 44 nucleotides ECD_01759 and ECD_01760 are separated by 96 nucleotides ECD_01760 and ECD_01761 are separated by 54 nucleotides ECD_01761 and ECD_01762 are separated by 21 nucleotides ECD_01762 and ECD_01763 are separated by 182 nucleotides
ECD_01758: ECD_01758 - UPF0756 family putative inner membrane protein, at 1,818,729 to 1,819,175
_01758
ECD_01759: ECD_01759 - putative DNA-binding transcriptional regulator, at 1,819,132 to 1,819,953
_01759
ECD_01760: ECD_01760 - putative MFS transporter, inner membrane protein, at 1,820,050 to 1,821,231
_01760
ECD_01761: ECD_01761 - DUF488 family protein, at 1,821,286 to 1,821,633
_01761
ECD_01762: ECD_01762 - DUF333 family outer membrane lipoprotein, at 1,821,655 to 1,821,909
_01762
ECD_01763: ECD_01763 - diguanylate cyclase, at 1,822,092 to 1,823,117
_01763
Position (kb)
1820
1821
1822 Strain fitness (log2 ratio)
-2
-1
0
1 at 1819.190 kb on + strand at 1819.325 kb on - strand, within ECD_01759 at 1819.885 kb on - strand at 1820.004 kb on + strand at 1820.049 kb on + strand at 1820.050 kb on - strand at 1820.050 kb on - strand at 1820.354 kb on - strand, within ECD_01760 at 1820.354 kb on - strand, within ECD_01760 at 1820.361 kb on - strand, within ECD_01760 at 1820.654 kb on + strand, within ECD_01760 at 1820.659 kb on - strand, within ECD_01760 at 1821.118 kb on - strand at 1821.625 kb on - strand at 1822.001 kb on + strand at 1822.034 kb on - strand at 1822.034 kb on - strand at 1822.034 kb on - strand at 1822.051 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,819,190 + +1.1 1,819,325 - ECD_01759 0.23 +0.2 1,819,885 - -1.8 1,820,004 + +1.2 1,820,049 + -2.1 1,820,050 - -0.2 1,820,050 - -0.2 1,820,354 - ECD_01760 0.26 +1.1 1,820,354 - ECD_01760 0.26 -0.4 1,820,361 - ECD_01760 0.26 +1.2 1,820,654 + ECD_01760 0.51 -0.1 1,820,659 - ECD_01760 0.52 +0.9 1,821,118 - +0.2 1,821,625 - +0.9 1,822,001 + +0.7 1,822,034 - -0.1 1,822,034 - +0.2 1,822,034 - +1.6 1,822,051 + +0.6
Or see this region's nucleotide sequence