Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01755 and ECD_01756 are separated by 42 nucleotides ECD_01756 and ECD_01757 are separated by 0 nucleotides ECD_01757 and ECD_01758 are separated by 169 nucleotides ECD_01758 and ECD_01759 overlap by 44 nucleotides ECD_01759 and ECD_01760 are separated by 96 nucleotides
ECD_01755: ECD_01755 - putative diguanylate cyclase, at 1,816,418 to 1,817,908
_01755
ECD_01756: ECD_01756 - aminoacyl-tRNA editing domain protein, at 1,817,951 to 1,818,454
_01756
ECD_01757: ECD_01757 - uncharacterized protein, at 1,818,455 to 1,818,559
_01757
ECD_01758: ECD_01758 - UPF0756 family putative inner membrane protein, at 1,818,729 to 1,819,175
_01758
ECD_01759: ECD_01759 - putative DNA-binding transcriptional regulator, at 1,819,132 to 1,819,953
_01759
ECD_01760: ECD_01760 - putative MFS transporter, inner membrane protein, at 1,820,050 to 1,821,231
_01760
Position (kb)
1818
1819
1820 Strain fitness (log2 ratio)
-2
-1
0
1 at 1818.456 kb on + strand at 1818.456 kb on + strand at 1818.457 kb on - strand at 1819.190 kb on + strand at 1819.325 kb on - strand, within ECD_01759 at 1819.885 kb on - strand at 1820.004 kb on + strand at 1820.049 kb on + strand at 1820.050 kb on - strand at 1820.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,818,456 + +1.2 1,818,456 + -0.1 1,818,457 - +0.5 1,819,190 + +1.1 1,819,325 - ECD_01759 0.23 +0.2 1,819,885 - -1.8 1,820,004 + +1.2 1,820,049 + -2.1 1,820,050 - -0.2 1,820,050 - -0.2
Or see this region's nucleotide sequence