Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01647 and ECD_01648 are separated by 148 nucleotides ECD_01648 and ECD_01649 are separated by 12 nucleotides ECD_01649 and ECD_01650 overlap by 4 nucleotides
ECD_01647: ECD_01647 - murein L,D-transpeptidase, at 1,702,990 to 1,703,994
_01647
ECD_01648: ECD_01648 - sulfur acceptor protein, at 1,704,143 to 1,704,559
_01648
ECD_01649: ECD_01649 - cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP-dependent, at 1,704,572 to 1,705,792
_01649
ECD_01650: ECD_01650 - component of SufBCD Fe-S cluster assembly scaffold, at 1,705,789 to 1,707,060
_01650
Position (kb)
1704
1705
1706 Strain fitness (log2 ratio)
-1
0
1 at 1703.626 kb on - strand, within ECD_01647 at 1704.144 kb on + strand at 1704.640 kb on - strand at 1704.679 kb on - strand at 1704.682 kb on - strand at 1704.915 kb on + strand, within ECD_01649 at 1705.084 kb on - strand, within ECD_01649 at 1705.418 kb on - strand, within ECD_01649 at 1705.622 kb on - strand, within ECD_01649 at 1705.963 kb on - strand, within ECD_01650 at 1706.122 kb on - strand, within ECD_01650 at 1706.176 kb on - strand, within ECD_01650 at 1706.187 kb on + strand, within ECD_01650 at 1706.335 kb on - strand, within ECD_01650 at 1706.593 kb on - strand, within ECD_01650
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,703,626 - ECD_01647 0.63 -1.0 1,704,144 + +0.4 1,704,640 - +1.4 1,704,679 - +0.2 1,704,682 - -0.3 1,704,915 + ECD_01649 0.28 +1.5 1,705,084 - ECD_01649 0.42 +0.7 1,705,418 - ECD_01649 0.69 -0.0 1,705,622 - ECD_01649 0.86 +1.2 1,705,963 - ECD_01650 0.14 +0.5 1,706,122 - ECD_01650 0.26 -0.4 1,706,176 - ECD_01650 0.30 +1.3 1,706,187 + ECD_01650 0.31 +1.2 1,706,335 - ECD_01650 0.43 -0.1 1,706,593 - ECD_01650 0.63 +0.0
Or see this region's nucleotide sequence