Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01634 and ECD_01635 are separated by 40 nucleotides ECD_01635 and ECD_t00027 are separated by 307 nucleotides ECD_t00027 and ECD_t00028 are separated by 4 nucleotides ECD_t00028 and ECD_01636 are separated by 107 nucleotides
ECD_01634: ECD_01634 - multidrug efflux system transporter, at 1,688,726 to 1,690,099
_01634
ECD_01635: ECD_01635 - autotransporter adhesin-related protein, at 1,690,140 to 1,691,396
_01635
ECD_t00027: ECD_t00027 - tRNA-Val, at 1,691,704 to 1,691,780
_t00027
ECD_t00028: ECD_t00028 - tRNA-Val, at 1,691,785 to 1,691,861
_t00028
ECD_01636: ECD_01636 - putative monooxygenase, at 1,691,969 to 1,692,274
_01636
Position (kb)
1690
1691
1692 Strain fitness (log2 ratio)
-1
0
1 at 1689.259 kb on + strand, within ECD_01634 at 1689.259 kb on + strand, within ECD_01634 at 1689.357 kb on - strand, within ECD_01634 at 1689.866 kb on + strand, within ECD_01634 at 1690.642 kb on - strand, within ECD_01635 at 1690.779 kb on - strand, within ECD_01635 at 1690.806 kb on - strand, within ECD_01635 at 1690.933 kb on - strand, within ECD_01635 at 1691.439 kb on - strand at 1691.695 kb on + strand at 1691.695 kb on + strand at 1691.695 kb on + strand at 1691.711 kb on + strand at 1691.711 kb on + strand at 1691.916 kb on + strand at 1691.916 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,689,259 + ECD_01634 0.39 +0.4 1,689,259 + ECD_01634 0.39 -1.7 1,689,357 - ECD_01634 0.46 +1.2 1,689,866 + ECD_01634 0.83 -1.4 1,690,642 - ECD_01635 0.40 +0.7 1,690,779 - ECD_01635 0.51 -0.4 1,690,806 - ECD_01635 0.53 -0.3 1,690,933 - ECD_01635 0.63 +0.8 1,691,439 - +0.7 1,691,695 + +0.8 1,691,695 + +0.2 1,691,695 + +0.1 1,691,711 + -0.2 1,691,711 + -0.3 1,691,916 + +0.3 1,691,916 + +0.9
Or see this region's nucleotide sequence