Strain Fitness in Escherichia coli BL21 around ECD_01635

Experiment: N4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01634 and ECD_01635 are separated by 40 nucleotidesECD_01635 and ECD_t00027 are separated by 307 nucleotidesECD_t00027 and ECD_t00028 are separated by 4 nucleotidesECD_t00028 and ECD_01636 are separated by 107 nucleotides ECD_01634: ECD_01634 - multidrug efflux system transporter, at 1,688,726 to 1,690,099 _01634 ECD_01635: ECD_01635 - autotransporter adhesin-related protein, at 1,690,140 to 1,691,396 _01635 ECD_t00027: ECD_t00027 - tRNA-Val, at 1,691,704 to 1,691,780 _t00027 ECD_t00028: ECD_t00028 - tRNA-Val, at 1,691,785 to 1,691,861 _t00028 ECD_01636: ECD_01636 - putative monooxygenase, at 1,691,969 to 1,692,274 _01636 Position (kb) 1690 1691 1692Strain fitness (log2 ratio) -1 0 1at 1689.259 kb on + strand, within ECD_01634at 1689.259 kb on + strand, within ECD_01634at 1689.357 kb on - strand, within ECD_01634at 1689.866 kb on + strand, within ECD_01634at 1690.642 kb on - strand, within ECD_01635at 1690.779 kb on - strand, within ECD_01635at 1690.806 kb on - strand, within ECD_01635at 1690.933 kb on - strand, within ECD_01635at 1691.439 kb on - strandat 1691.695 kb on + strandat 1691.695 kb on + strandat 1691.695 kb on + strandat 1691.711 kb on + strandat 1691.711 kb on + strandat 1691.916 kb on + strandat 1691.916 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N4
remove
1,689,259 + ECD_01634 0.39 +0.4
1,689,259 + ECD_01634 0.39 -1.7
1,689,357 - ECD_01634 0.46 +1.2
1,689,866 + ECD_01634 0.83 -1.4
1,690,642 - ECD_01635 0.40 +0.7
1,690,779 - ECD_01635 0.51 -0.4
1,690,806 - ECD_01635 0.53 -0.3
1,690,933 - ECD_01635 0.63 +0.8
1,691,439 - +0.7
1,691,695 + +0.8
1,691,695 + +0.2
1,691,695 + +0.1
1,691,711 + -0.2
1,691,711 + -0.3
1,691,916 + +0.3
1,691,916 + +0.9

Or see this region's nucleotide sequence