Strain Fitness in Escherichia coli BL21 around ECD_01585

Experiment: N4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01584 and ECD_01585 are separated by 38 nucleotidesECD_01585 and ECD_01586 overlap by 4 nucleotides ECD_01584: ECD_01584 - putative outer membrane porin for beta-glucuronides porin protein, at 1,636,783 to 1,638,048 _01584 ECD_01585: ECD_01585 - glucuronide transporter, at 1,638,087 to 1,639,460 _01585 ECD_01586: ECD_01586 - beta-D-glucuronidase, at 1,639,457 to 1,641,268 _01586 Position (kb) 1638 1639 1640Strain fitness (log2 ratio) -1 0 1at 1637.177 kb on - strand, within ECD_01584at 1637.177 kb on - strand, within ECD_01584at 1637.302 kb on - strand, within ECD_01584at 1637.602 kb on - strand, within ECD_01584at 1639.114 kb on + strand, within ECD_01585at 1639.215 kb on + strand, within ECD_01585at 1639.676 kb on - strand, within ECD_01586

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N4
remove
1,637,177 - ECD_01584 0.31 +0.6
1,637,177 - ECD_01584 0.31 -0.3
1,637,302 - ECD_01584 0.41 +1.2
1,637,602 - ECD_01584 0.65 +0.4
1,639,114 + ECD_01585 0.75 -0.6
1,639,215 + ECD_01585 0.82 -0.4
1,639,676 - ECD_01586 0.12 +1.6

Or see this region's nucleotide sequence