Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01581 and ECD_01582 are separated by 198 nucleotides ECD_01582 and ECD_01583 are separated by 100 nucleotides
ECD_01581: ECD_01581 - fumarate hydratase (fumarase A), aerobic Class I, at 1,631,928 to 1,633,574
_01581
ECD_01582: ECD_01582 - mannose-6-phosphate isomerase, at 1,633,773 to 1,634,948
_01582
ECD_01583: ECD_01583 - DUF945 family protein, at 1,635,049 to 1,636,557
_01583
Position (kb)
1633
1634
1635 Strain fitness (log2 ratio)
-2
-1
0
1 at 1632.818 kb on - strand, within ECD_01581 at 1632.818 kb on - strand, within ECD_01581 at 1632.891 kb on - strand, within ECD_01581 at 1632.995 kb on - strand, within ECD_01581 at 1632.995 kb on - strand, within ECD_01581 at 1633.064 kb on - strand, within ECD_01581 at 1633.111 kb on + strand, within ECD_01581 at 1633.112 kb on - strand, within ECD_01581 at 1633.116 kb on - strand, within ECD_01581 at 1633.116 kb on - strand, within ECD_01581 at 1633.160 kb on - strand, within ECD_01581 at 1633.169 kb on - strand, within ECD_01581 at 1633.322 kb on - strand, within ECD_01581 at 1633.325 kb on + strand, within ECD_01581 at 1633.511 kb on - strand at 1633.514 kb on - strand at 1633.967 kb on + strand, within ECD_01582 at 1634.541 kb on + strand, within ECD_01582 at 1634.762 kb on + strand, within ECD_01582 at 1635.048 kb on + strand at 1635.054 kb on + strand at 1635.054 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,632,818 - ECD_01581 0.54 +0.4 1,632,818 - ECD_01581 0.54 +0.7 1,632,891 - ECD_01581 0.58 -0.7 1,632,995 - ECD_01581 0.65 +0.3 1,632,995 - ECD_01581 0.65 +1.4 1,633,064 - ECD_01581 0.69 +0.3 1,633,111 + ECD_01581 0.72 -0.9 1,633,112 - ECD_01581 0.72 -1.0 1,633,116 - ECD_01581 0.72 +0.3 1,633,116 - ECD_01581 0.72 -1.6 1,633,160 - ECD_01581 0.75 +0.1 1,633,169 - ECD_01581 0.75 -0.8 1,633,322 - ECD_01581 0.85 +1.4 1,633,325 + ECD_01581 0.85 +1.3 1,633,511 - -1.5 1,633,514 - +0.1 1,633,967 + ECD_01582 0.16 -1.6 1,634,541 + ECD_01582 0.65 -0.2 1,634,762 + ECD_01582 0.84 -0.1 1,635,048 + -0.5 1,635,054 + -2.0 1,635,054 + +0.1
Or see this region's nucleotide sequence