Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01575 and ECD_01576 overlap by 4 nucleotides ECD_01576 and ECD_01577 are separated by 128 nucleotides ECD_01577 and ECD_01578 are separated by 3 nucleotides
ECD_01575: ECD_01575 - dihydromonapterin reductase, NADPH-dependent; dihydrofolate reductase isozyme, at 1,626,173 to 1,626,895
_01575
ECD_01576: ECD_01576 - GlpM family inner membrane protein, at 1,626,892 to 1,627,227
_01576
ECD_01577: ECD_01577 - response regulator of RstAB two-component system, at 1,627,356 to 1,628,075
_01577
ECD_01578: ECD_01578 - sensory histidine kinase of RstAB two-component system, at 1,628,079 to 1,629,380
_01578
Position (kb) 1627
1628
1629 Strain fitness (log2 ratio) -2
-1
0
1 at 1626.541 kb on - strand, within ECD_01575 at 1626.915 kb on + strand at 1627.045 kb on - strand, within ECD_01576 at 1627.369 kb on + strand at 1627.649 kb on + strand, within ECD_01577 at 1627.649 kb on + strand, within ECD_01577 at 1628.510 kb on + strand, within ECD_01578 at 1628.572 kb on + strand, within ECD_01578 at 1628.624 kb on + strand, within ECD_01578
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,626,541 - ECD_01575 0.51 -1.3 1,626,915 + -0.1 1,627,045 - ECD_01576 0.46 -0.5 1,627,369 + -0.8 1,627,649 + ECD_01577 0.41 -0.1 1,627,649 + ECD_01577 0.41 -2.0 1,628,510 + ECD_01578 0.33 -0.8 1,628,572 + ECD_01578 0.38 +0.8 1,628,624 + ECD_01578 0.42 +1.2
Or see this region's nucleotide sequence