Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01480 and ECD_01481 overlap by 1 nucleotides ECD_01481 and ECD_01482 are separated by 63 nucleotides ECD_01482 and ECD_01483 are separated by 100 nucleotides
ECD_01480: ECD_01480 - DUF4186 family protein, at 1,560,539 to 1,560,898
_01480
ECD_01481: ECD_01481 - glutaminase 2, at 1,560,898 to 1,561,824
_01481
ECD_01482: ECD_01482 - succinate semialdehyde dehydrogenase, NAD(P)+-dependent, at 1,561,888 to 1,563,276
_01482
ECD_01483: ECD_01483 - putative DNA-binding transcriptional regulator, at 1,563,377 to 1,564,258
_01483
Position (kb) 1561
1562
1563
1564 Strain fitness (log2 ratio) -1
0
1
2 at 1561.171 kb on - strand, within ECD_01481 at 1561.414 kb on - strand, within ECD_01481 at 1561.496 kb on - strand, within ECD_01481 at 1561.497 kb on + strand, within ECD_01481 at 1561.498 kb on - strand, within ECD_01481 at 1561.692 kb on + strand, within ECD_01481 at 1561.865 kb on - strand at 1562.333 kb on - strand, within ECD_01482 at 1562.800 kb on - strand, within ECD_01482 at 1562.804 kb on - strand, within ECD_01482 at 1563.645 kb on + strand, within ECD_01483
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,561,171 - ECD_01481 0.29 -0.2 1,561,414 - ECD_01481 0.56 -0.1 1,561,496 - ECD_01481 0.65 +1.8 1,561,497 + ECD_01481 0.65 +1.1 1,561,498 - ECD_01481 0.65 -0.1 1,561,692 + ECD_01481 0.86 +1.8 1,561,865 - -0.7 1,562,333 - ECD_01482 0.32 -0.8 1,562,800 - ECD_01482 0.66 +0.1 1,562,804 - ECD_01482 0.66 -1.5 1,563,645 + ECD_01483 0.30 +0.7
Or see this region's nucleotide sequence