Strain Fitness in Escherichia coli BL21 around ECD_01305

Experiment: N4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01303 and ECD_01305 are separated by 334 nucleotidesECD_01305 and ECD_01306 are separated by 137 nucleotides ECD_01303: ECD_01303 - murein peptide amidase A, at 1,376,237 to 1,376,965 _01303 ECD_01305: ECD_01305 - S9-like protein non-peptidase family protein, at 1,377,300 to 1,378,220 _01305 ECD_01306: ECD_01306 - murein peptide degradation regulator, at 1,378,358 to 1,379,257 _01306 Position (kb) 1377 1378 1379Strain fitness (log2 ratio) -1 0 1at 1376.589 kb on - strand, within ECD_01303at 1376.988 kb on - strandat 1377.530 kb on - strand, within ECD_01305at 1377.537 kb on - strand, within ECD_01305at 1377.855 kb on - strand, within ECD_01305at 1377.855 kb on - strand, within ECD_01305at 1377.908 kb on - strand, within ECD_01305at 1378.749 kb on - strand, within ECD_01306

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N4
remove
1,376,589 - ECD_01303 0.48 -1.1
1,376,988 - -0.3
1,377,530 - ECD_01305 0.25 +0.1
1,377,537 - ECD_01305 0.26 -0.6
1,377,855 - ECD_01305 0.60 -0.6
1,377,855 - ECD_01305 0.60 -0.4
1,377,908 - ECD_01305 0.66 -0.4
1,378,749 - ECD_01306 0.43 +0.1

Or see this region's nucleotide sequence