Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01246 and ECD_01247 overlap by 4 nucleotides ECD_01247 and ECD_01248 are separated by 219 nucleotides ECD_01248 and ECD_01249 are separated by 35 nucleotides ECD_01249 and ECD_01250 are separated by 379 nucleotides
ECD_01246: ECD_01246 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,314,137 to 1,314,727
_01246
ECD_01247: ECD_01247 - putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase, at 1,314,724 to 1,315,482
_01247
ECD_01248: ECD_01248 - inner membrane protein, S49 peptidase family protein, at 1,315,702 to 1,316,751
_01248
ECD_01249: ECD_01249 - DUF2498 protein YciN, at 1,316,787 to 1,317,038
_01249
ECD_01250: ECD_01250 - DNA topoisomerase I, omega subunit, at 1,317,418 to 1,320,015
_01250
Position (kb)
1315
1316
1317 Strain fitness (log2 ratio)
-2
-1
0
1 at 1314.990 kb on - strand, within ECD_01247 at 1314.990 kb on - strand, within ECD_01247 at 1315.036 kb on - strand, within ECD_01247 at 1315.070 kb on - strand, within ECD_01247 at 1315.316 kb on - strand, within ECD_01247 at 1315.523 kb on - strand at 1315.528 kb on - strand at 1315.647 kb on - strand at 1315.803 kb on + strand at 1315.852 kb on + strand, within ECD_01248 at 1315.854 kb on + strand, within ECD_01248 at 1315.938 kb on + strand, within ECD_01248 at 1316.639 kb on + strand, within ECD_01248 at 1316.644 kb on + strand, within ECD_01248 at 1317.040 kb on - strand at 1317.043 kb on + strand at 1317.177 kb on + strand at 1317.178 kb on - strand at 1317.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,314,990 - ECD_01247 0.35 -0.3 1,314,990 - ECD_01247 0.35 +1.0 1,315,036 - ECD_01247 0.41 -0.0 1,315,070 - ECD_01247 0.46 -1.6 1,315,316 - ECD_01247 0.78 -1.2 1,315,523 - -1.9 1,315,528 - -0.5 1,315,647 - -0.2 1,315,803 + +1.0 1,315,852 + ECD_01248 0.14 -1.9 1,315,854 + ECD_01248 0.14 -0.1 1,315,938 + ECD_01248 0.22 +1.4 1,316,639 + ECD_01248 0.89 -0.8 1,316,644 + ECD_01248 0.90 -2.6 1,317,040 - -0.1 1,317,043 + +0.1 1,317,177 + -1.4 1,317,178 - -1.4 1,317,404 + +0.6
Or see this region's nucleotide sequence