Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01232 and ECD_01233 are separated by 85 nucleotides ECD_01233 and ECD_01234 are separated by 380 nucleotides ECD_01234 and ECD_01235 overlap by 1 nucleotides
ECD_01232: ECD_01232 - putative rubrerythrin/ferritin-like metal-binding protein, at 1,300,862 to 1,301,362
_01232
ECD_01233: ECD_01233 - KGG family protein, at 1,301,448 to 1,301,627
_01233
ECD_01234: ECD_01234 - tryptophan synthase, alpha subunit, at 1,302,008 to 1,302,814
_01234
ECD_01235: ECD_01235 - tryptophan synthase, beta subunit, at 1,302,814 to 1,304,007
_01235
Position (kb) 1302
1303 Strain fitness (log2 ratio) -1
0
1 at 1302.082 kb on + strand at 1302.511 kb on - strand, within ECD_01234 at 1302.661 kb on + strand, within ECD_01234 at 1303.449 kb on + strand, within ECD_01235 at 1303.451 kb on + strand, within ECD_01235 at 1303.452 kb on - strand, within ECD_01235 at 1303.611 kb on - strand, within ECD_01235 at 1303.611 kb on - strand, within ECD_01235 at 1303.788 kb on - strand, within ECD_01235 at 1303.813 kb on - strand, within ECD_01235
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,302,082 + -1.2 1,302,511 - ECD_01234 0.62 +0.1 1,302,661 + ECD_01234 0.81 -1.5 1,303,449 + ECD_01235 0.53 -0.9 1,303,451 + ECD_01235 0.53 +1.0 1,303,452 - ECD_01235 0.53 -1.3 1,303,611 - ECD_01235 0.67 -1.0 1,303,611 - ECD_01235 0.67 +1.2 1,303,788 - ECD_01235 0.82 -0.8 1,303,813 - ECD_01235 0.84 -0.8
Or see this region's nucleotide sequence