Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01224 and ECD_01225 are separated by 299 nucleotides ECD_01225 and ECD_01226 are separated by 223 nucleotides ECD_01226 and ECD_01227 are separated by 39 nucleotides ECD_01227 and ECD_01228 are separated by 104 nucleotides
ECD_01224: ECD_01224 - voltage-gated potassium channel, at 1,294,608 to 1,295,861
_01224
ECD_01225: ECD_01225 - putative DGPF domain-containing enzyme, at 1,296,161 to 1,296,457
_01225
ECD_01226: ECD_01226 - membrane spanning protein in TonB-ExbB-ExbD transport complex, at 1,296,681 to 1,297,400
_01226
ECD_01227: ECD_01227 - acyl-CoA esterase, at 1,297,440 to 1,297,838
_01227
ECD_01228: ECD_01228 - IspA family inner membrane protein, at 1,297,943 to 1,298,482
_01228
Position (kb) 1296
1297
1298 Strain fitness (log2 ratio) -1
0
1 at 1296.039 kb on + strand at 1296.220 kb on - strand, within ECD_01225 at 1296.369 kb on - strand, within ECD_01225 at 1296.422 kb on - strand, within ECD_01225 at 1296.492 kb on - strand at 1296.765 kb on + strand, within ECD_01226 at 1296.767 kb on + strand, within ECD_01226 at 1296.886 kb on + strand, within ECD_01226 at 1297.214 kb on + strand, within ECD_01226 at 1297.490 kb on - strand, within ECD_01227 at 1297.494 kb on - strand, within ECD_01227 at 1297.494 kb on - strand, within ECD_01227 at 1297.516 kb on + strand, within ECD_01227 at 1297.823 kb on + strand at 1297.824 kb on - strand at 1297.824 kb on - strand at 1297.842 kb on - strand at 1297.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,296,039 + +0.9 1,296,220 - ECD_01225 0.20 -1.0 1,296,369 - ECD_01225 0.70 +0.3 1,296,422 - ECD_01225 0.88 -0.9 1,296,492 - +0.7 1,296,765 + ECD_01226 0.12 -0.5 1,296,767 + ECD_01226 0.12 -0.1 1,296,886 + ECD_01226 0.28 -0.9 1,297,214 + ECD_01226 0.74 -0.6 1,297,490 - ECD_01227 0.13 +0.0 1,297,494 - ECD_01227 0.14 +0.2 1,297,494 - ECD_01227 0.14 -0.7 1,297,516 + ECD_01227 0.19 +1.1 1,297,823 + -0.5 1,297,824 - +0.9 1,297,824 - +0.5 1,297,842 - +0.4 1,297,878 + +0.8
Or see this region's nucleotide sequence