Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01005 and ECD_01006 are separated by 37 nucleotides ECD_01006 and ECD_01007 are separated by 20 nucleotides ECD_01007 and ECD_04303 are separated by 203 nucleotides
ECD_01005: ECD_01005 - glucose-1-phosphatase/inositol phosphatase, at 1,069,866 to 1,071,107
_01005
ECD_01006: ECD_01006 - uncharacterized protein, at 1,071,145 to 1,071,372
_01006
ECD_01007: ECD_01007 - NAD(P)H:quinone oxidoreductase, at 1,071,393 to 1,071,989
_01007
ECD_04303: ECD_04303 - KGG family protein, at 1,072,193 to 1,072,429
_04303
ECD_01008: ECD_01008 - KGG family protein, at 1,072,362 to 1,072,535
_01008
Position (kb)
1071
1072 Strain fitness (log2 ratio)
-2
-1
0
1 at 1070.152 kb on + strand, within ECD_01005 at 1070.186 kb on - strand, within ECD_01005 at 1070.186 kb on - strand, within ECD_01005 at 1070.193 kb on + strand, within ECD_01005 at 1070.433 kb on + strand, within ECD_01005 at 1070.584 kb on - strand, within ECD_01005 at 1070.946 kb on + strand, within ECD_01005 at 1070.946 kb on + strand, within ECD_01005 at 1070.975 kb on + strand, within ECD_01005 at 1071.194 kb on - strand, within ECD_01006 at 1071.194 kb on - strand, within ECD_01006 at 1071.580 kb on - strand, within ECD_01007 at 1071.580 kb on - strand, within ECD_01007 at 1071.580 kb on - strand, within ECD_01007 at 1071.618 kb on - strand, within ECD_01007 at 1071.621 kb on - strand, within ECD_01007 at 1071.679 kb on + strand, within ECD_01007 at 1072.010 kb on - strand at 1072.170 kb on + strand at 1072.324 kb on + strand, within ECD_04303 at 1072.340 kb on + strand, within ECD_04303 at 1072.341 kb on - strand, within ECD_04303
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,070,152 + ECD_01005 0.23 +0.7 1,070,186 - ECD_01005 0.26 +0.3 1,070,186 - ECD_01005 0.26 -0.3 1,070,193 + ECD_01005 0.26 -0.4 1,070,433 + ECD_01005 0.46 +0.9 1,070,584 - ECD_01005 0.58 +0.9 1,070,946 + ECD_01005 0.87 +0.2 1,070,946 + ECD_01005 0.87 +1.0 1,070,975 + ECD_01005 0.89 -0.2 1,071,194 - ECD_01006 0.21 -0.8 1,071,194 - ECD_01006 0.21 -2.6 1,071,580 - ECD_01007 0.31 +0.0 1,071,580 - ECD_01007 0.31 -0.4 1,071,580 - ECD_01007 0.31 +0.4 1,071,618 - ECD_01007 0.38 -0.5 1,071,621 - ECD_01007 0.38 -0.3 1,071,679 + ECD_01007 0.48 -0.5 1,072,010 - +0.7 1,072,170 + +0.4 1,072,324 + ECD_04303 0.55 +0.0 1,072,340 + ECD_04303 0.62 -0.2 1,072,341 - ECD_04303 0.62 -0.7
Or see this region's nucleotide sequence