Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00986 and ECD_00987 are separated by 45 nucleotides ECD_00987 and ECD_00988 overlap by 1 nucleotides ECD_00988 and ECD_00989 overlap by 4 nucleotides
ECD_00986: ECD_00986 - putative O-antigen capsule outer membrane auxillary protein export channel, at 1,049,753 to 1,050,892
_00986
ECD_00987: ECD_00987 - putative O-antigen capsule production periplasmic protein, at 1,050,938 to 1,053,034
_00987
ECD_00988: ECD_00988 - putative O-antigen capsule production periplasmic protein, at 1,053,034 to 1,053,780
_00988
ECD_00989: ECD_00989 - O-antigen capsule production lipoprotein, at 1,053,777 to 1,054,421
_00989
Position (kb)
1050
1051
1052
1053
1054 Strain fitness (log2 ratio)
-1
0
1 at 1050.373 kb on - strand, within ECD_00986 at 1050.504 kb on + strand, within ECD_00986 at 1050.646 kb on - strand, within ECD_00986 at 1050.646 kb on - strand, within ECD_00986 at 1050.763 kb on - strand, within ECD_00986 at 1050.829 kb on + strand at 1050.829 kb on + strand at 1050.830 kb on - strand at 1051.109 kb on - strand at 1051.139 kb on + strand at 1051.139 kb on + strand at 1051.139 kb on + strand at 1051.359 kb on + strand, within ECD_00987 at 1051.360 kb on - strand, within ECD_00987 at 1051.360 kb on - strand, within ECD_00987 at 1051.455 kb on + strand, within ECD_00987 at 1051.456 kb on - strand, within ECD_00987 at 1051.597 kb on + strand, within ECD_00987 at 1051.617 kb on + strand, within ECD_00987 at 1051.755 kb on + strand, within ECD_00987 at 1052.038 kb on + strand, within ECD_00987 at 1052.039 kb on - strand, within ECD_00987 at 1052.039 kb on - strand, within ECD_00987 at 1052.039 kb on - strand, within ECD_00987 at 1052.040 kb on + strand, within ECD_00987 at 1052.040 kb on + strand, within ECD_00987 at 1052.041 kb on - strand, within ECD_00987 at 1052.041 kb on - strand, within ECD_00987 at 1052.091 kb on + strand, within ECD_00987 at 1052.092 kb on - strand, within ECD_00987 at 1052.253 kb on + strand, within ECD_00987 at 1052.404 kb on - strand, within ECD_00987 at 1052.494 kb on - strand, within ECD_00987 at 1052.721 kb on + strand, within ECD_00987 at 1052.722 kb on - strand, within ECD_00987 at 1052.755 kb on + strand, within ECD_00987 at 1052.757 kb on + strand, within ECD_00987 at 1053.012 kb on - strand at 1053.208 kb on - strand, within ECD_00988 at 1053.331 kb on - strand, within ECD_00988 at 1053.331 kb on - strand, within ECD_00988 at 1053.333 kb on + strand, within ECD_00988 at 1053.355 kb on - strand, within ECD_00988 at 1053.357 kb on - strand, within ECD_00988 at 1053.407 kb on - strand, within ECD_00988
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,050,373 - ECD_00986 0.54 +0.6 1,050,504 + ECD_00986 0.66 -1.3 1,050,646 - ECD_00986 0.78 -0.6 1,050,646 - ECD_00986 0.78 +0.2 1,050,763 - ECD_00986 0.89 -0.1 1,050,829 + -0.0 1,050,829 + +0.5 1,050,830 - +1.2 1,051,109 - -1.3 1,051,139 + +1.3 1,051,139 + +0.8 1,051,139 + +1.3 1,051,359 + ECD_00987 0.20 +0.1 1,051,360 - ECD_00987 0.20 -0.1 1,051,360 - ECD_00987 0.20 +0.3 1,051,455 + ECD_00987 0.25 -0.4 1,051,456 - ECD_00987 0.25 -0.8 1,051,597 + ECD_00987 0.31 +0.7 1,051,617 + ECD_00987 0.32 +0.1 1,051,755 + ECD_00987 0.39 +0.3 1,052,038 + ECD_00987 0.52 -0.4 1,052,039 - ECD_00987 0.53 -1.3 1,052,039 - ECD_00987 0.53 -0.9 1,052,039 - ECD_00987 0.53 -0.3 1,052,040 + ECD_00987 0.53 +0.6 1,052,040 + ECD_00987 0.53 +0.3 1,052,041 - ECD_00987 0.53 +1.2 1,052,041 - ECD_00987 0.53 -0.5 1,052,091 + ECD_00987 0.55 -1.3 1,052,092 - ECD_00987 0.55 -0.6 1,052,253 + ECD_00987 0.63 +0.0 1,052,404 - ECD_00987 0.70 -1.7 1,052,494 - ECD_00987 0.74 -0.2 1,052,721 + ECD_00987 0.85 +0.5 1,052,722 - ECD_00987 0.85 -0.0 1,052,755 + ECD_00987 0.87 +0.8 1,052,757 + ECD_00987 0.87 -0.5 1,053,012 - -0.5 1,053,208 - ECD_00988 0.23 +1.1 1,053,331 - ECD_00988 0.40 +0.9 1,053,331 - ECD_00988 0.40 +0.8 1,053,333 + ECD_00988 0.40 -0.7 1,053,355 - ECD_00988 0.43 -1.4 1,053,357 - ECD_00988 0.43 +0.3 1,053,407 - ECD_00988 0.50 +0.0
Or see this region's nucleotide sequence