Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00983 and ECD_00984 are separated by 114 nucleotides ECD_00984 and ECD_00985 are separated by 19 nucleotides ECD_00985 and ECD_00986 overlap by 13 nucleotides
ECD_00983: ECD_00983 - phosphoanhydride phosphorylase, at 1,045,706 to 1,047,004
_00983
ECD_00984: ECD_00984 - tyrosine-protein kinase, role in O-antigen capsule formation, at 1,047,119 to 1,049,299
_00984
ECD_00985: ECD_00985 - O-antigen capsule forming protein-tyrosine-phosphatase; Etk-P dephosphorylase, at 1,049,319 to 1,049,765
_00985
ECD_00986: ECD_00986 - putative O-antigen capsule outer membrane auxillary protein export channel, at 1,049,753 to 1,050,892
_00986
Position (kb)
1047
1048
1049
1050 Strain fitness (log2 ratio)
-2
-1
0
1 at 1046.122 kb on + strand, within ECD_00983 at 1046.146 kb on + strand, within ECD_00983 at 1046.147 kb on - strand, within ECD_00983 at 1046.308 kb on + strand, within ECD_00983 at 1046.636 kb on + strand, within ECD_00983 at 1046.668 kb on + strand, within ECD_00983 at 1046.879 kb on - strand at 1047.150 kb on + strand at 1047.154 kb on + strand at 1047.154 kb on + strand at 1047.215 kb on - strand at 1047.725 kb on - strand, within ECD_00984 at 1048.130 kb on - strand, within ECD_00984 at 1048.145 kb on + strand, within ECD_00984 at 1048.279 kb on - strand, within ECD_00984 at 1048.300 kb on - strand, within ECD_00984 at 1048.574 kb on - strand, within ECD_00984 at 1048.724 kb on - strand, within ECD_00984 at 1048.778 kb on - strand, within ECD_00984 at 1048.812 kb on + strand, within ECD_00984 at 1048.812 kb on + strand, within ECD_00984 at 1049.122 kb on + strand at 1049.308 kb on - strand at 1049.495 kb on + strand, within ECD_00985 at 1049.665 kb on - strand, within ECD_00985
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,046,122 + ECD_00983 0.32 +0.1 1,046,146 + ECD_00983 0.34 +1.0 1,046,147 - ECD_00983 0.34 +0.2 1,046,308 + ECD_00983 0.46 -0.1 1,046,636 + ECD_00983 0.72 -0.8 1,046,668 + ECD_00983 0.74 +0.9 1,046,879 - -0.1 1,047,150 + +0.1 1,047,154 + +0.7 1,047,154 + -0.4 1,047,215 - -0.5 1,047,725 - ECD_00984 0.28 -0.1 1,048,130 - ECD_00984 0.46 +0.1 1,048,145 + ECD_00984 0.47 -1.3 1,048,279 - ECD_00984 0.53 -1.0 1,048,300 - ECD_00984 0.54 -0.3 1,048,574 - ECD_00984 0.67 -0.0 1,048,724 - ECD_00984 0.74 -0.3 1,048,778 - ECD_00984 0.76 -1.8 1,048,812 + ECD_00984 0.78 -0.0 1,048,812 + ECD_00984 0.78 +0.1 1,049,122 + +0.0 1,049,308 - +0.1 1,049,495 + ECD_00985 0.39 +0.3 1,049,665 - ECD_00985 0.77 -0.3
Or see this region's nucleotide sequence