Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00884 and ECD_00885 are separated by 72 nucleotides ECD_00885 and ECD_00886 are separated by 322 nucleotides ECD_00886 and ECD_00887 are separated by 30 nucleotides
ECD_00884: ECD_00884 - macrolide ABC transporter peremase/ATPase, at 925,050 to 926,996
_00884
ECD_00885: ECD_00885 - inhibitor of DNA replication, cold shock protein-like protein, at 927,069 to 927,293
_00885
ECD_00886: ECD_00886 - regulatory protein for ClpA substrate specificity, at 927,616 to 927,936
_00886
ECD_00887: ECD_00887 - ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity, at 927,967 to 930,243
_00887
Position (kb) 927
928 Strain fitness (log2 ratio) -1
0
1
2 at 926.668 kb on + strand, within ECD_00884 at 926.668 kb on + strand, within ECD_00884 at 926.675 kb on + strand, within ECD_00884 at 926.678 kb on + strand, within ECD_00884 at 926.678 kb on + strand, within ECD_00884 at 926.678 kb on + strand, within ECD_00884 at 926.678 kb on + strand, within ECD_00884 at 926.731 kb on + strand, within ECD_00884 at 926.813 kb on - strand at 926.974 kb on + strand at 927.104 kb on + strand, within ECD_00885 at 927.275 kb on + strand at 927.276 kb on - strand at 927.319 kb on + strand at 927.380 kb on - strand at 927.385 kb on + strand at 927.518 kb on + strand at 927.518 kb on + strand at 927.518 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.522 kb on + strand at 927.526 kb on + strand at 927.538 kb on + strand at 927.538 kb on + strand at 927.555 kb on + strand at 927.607 kb on + strand at 927.693 kb on + strand, within ECD_00886 at 927.693 kb on + strand, within ECD_00886 at 927.693 kb on + strand, within ECD_00886 at 927.693 kb on + strand, within ECD_00886 at 927.693 kb on + strand, within ECD_00886 at 927.699 kb on + strand, within ECD_00886 at 927.710 kb on + strand, within ECD_00886 at 927.779 kb on + strand, within ECD_00886 at 927.779 kb on + strand, within ECD_00886 at 927.999 kb on + strand at 928.038 kb on + strand at 928.038 kb on + strand at 928.330 kb on + strand, within ECD_00887 at 928.330 kb on + strand, within ECD_00887 at 928.330 kb on + strand, within ECD_00887 at 928.341 kb on + strand, within ECD_00887 at 928.702 kb on + strand, within ECD_00887 at 928.702 kb on + strand, within ECD_00887 at 928.936 kb on + strand, within ECD_00887
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 926,668 + ECD_00884 0.83 -0.3 926,668 + ECD_00884 0.83 +0.8 926,675 + ECD_00884 0.83 +1.8 926,678 + ECD_00884 0.84 +0.1 926,678 + ECD_00884 0.84 +1.2 926,678 + ECD_00884 0.84 +0.4 926,678 + ECD_00884 0.84 -0.8 926,731 + ECD_00884 0.86 +0.1 926,813 - +0.7 926,974 + +0.1 927,104 + ECD_00885 0.16 +0.2 927,275 + +0.1 927,276 - -0.6 927,319 + +0.1 927,380 - -0.0 927,385 + -0.2 927,518 + -0.7 927,518 + -0.2 927,518 + -1.0 927,522 + +0.2 927,522 + -0.1 927,522 + +0.1 927,522 + +0.4 927,522 + +0.5 927,522 + -0.1 927,522 + -0.6 927,522 + -0.5 927,522 + -0.3 927,526 + +0.0 927,538 + +2.0 927,538 + +0.3 927,555 + -0.3 927,607 + -0.4 927,693 + ECD_00886 0.24 -0.9 927,693 + ECD_00886 0.24 +0.5 927,693 + ECD_00886 0.24 -0.4 927,693 + ECD_00886 0.24 -0.3 927,693 + ECD_00886 0.24 -0.1 927,699 + ECD_00886 0.26 +0.5 927,710 + ECD_00886 0.29 +0.4 927,779 + ECD_00886 0.51 -0.8 927,779 + ECD_00886 0.51 -0.3 927,999 + -0.5 928,038 + +1.1 928,038 + +0.7 928,330 + ECD_00887 0.16 -0.4 928,330 + ECD_00887 0.16 +1.8 928,330 + ECD_00887 0.16 +0.7 928,341 + ECD_00887 0.16 -0.9 928,702 + ECD_00887 0.32 +0.4 928,702 + ECD_00887 0.32 -0.1 928,936 + ECD_00887 0.43 +0.8
Or see this region's nucleotide sequence