Strain Fitness in Escherichia coli BL21 around ECD_00818

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00816 and ECD_00817 are separated by 79 nucleotidesECD_00817 and ECD_00818 are separated by 131 nucleotidesECD_00818 and ECD_00819 are separated by 32 nucleotides ECD_00816: ECD_00816 - hypothetical protein, at 873,677 to 873,829 _00816 ECD_00817: ECD_00817 - Repressor protein, at 873,909 to 874,472 _00817 ECD_00818: ECD_00818 - hypothetical protein, at 874,604 to 874,825 _00818 ECD_00819: ECD_00819 - hypothetical protein, at 874,858 to 876,303 _00819 Position (kb) 874 875Strain fitness (log2 ratio) -1 0 1at 873.830 kb on - strandat 873.830 kb on - strandat 873.834 kb on - strandat 874.584 kb on + strandat 874.631 kb on - strand, within ECD_00818at 874.649 kb on - strand, within ECD_00818at 875.006 kb on + strand, within ECD_00819at 875.063 kb on + strand, within ECD_00819at 875.140 kb on + strand, within ECD_00819at 875.141 kb on - strand, within ECD_00819at 875.338 kb on - strand, within ECD_00819at 875.381 kb on - strand, within ECD_00819at 875.382 kb on + strand, within ECD_00819at 875.476 kb on + strand, within ECD_00819at 875.477 kb on - strand, within ECD_00819at 875.680 kb on + strand, within ECD_00819at 875.680 kb on + strand, within ECD_00819at 875.680 kb on + strand, within ECD_00819at 875.788 kb on - strand, within ECD_00819

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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873,830 - +0.1
873,830 - +0.3
873,834 - -0.3
874,584 + -0.3
874,631 - ECD_00818 0.12 -0.7
874,649 - ECD_00818 0.20 -0.7
875,006 + ECD_00819 0.10 -0.7
875,063 + ECD_00819 0.14 +1.0
875,140 + ECD_00819 0.20 -0.5
875,141 - ECD_00819 0.20 +0.7
875,338 - ECD_00819 0.33 +0.0
875,381 - ECD_00819 0.36 -0.7
875,382 + ECD_00819 0.36 +0.2
875,476 + ECD_00819 0.43 -1.7
875,477 - ECD_00819 0.43 +0.5
875,680 + ECD_00819 0.57 -0.6
875,680 + ECD_00819 0.57 -0.9
875,680 + ECD_00819 0.57 -0.3
875,788 - ECD_00819 0.64 -0.9

Or see this region's nucleotide sequence