Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00637 and ECD_00638 are separated by 576 nucleotides ECD_00638 and ECD_00639 are separated by 49 nucleotides ECD_00639 and ECD_00640 are separated by 83 nucleotides
ECD_00637: ECD_00637 - glutamyl-tRNA synthetase, at 665,967 to 667,631
_00637
ECD_00638: ECD_00638 - chitoporin, at 668,208 to 669,614
_00638
ECD_00639: ECD_00639 - chitosugar-induced verified lipoprotein, at 669,664 to 669,990
_00639
ECD_00640: ECD_00640 - ferric iron uptake regulon transcriptional repressor; autorepressor, at 670,074 to 670,520
_00640
Position (kb) 668
669
670 Strain fitness (log2 ratio) -1
0
1
2 at 668.213 kb on + strand at 668.231 kb on + strand at 668.342 kb on - strand at 668.342 kb on - strand at 668.344 kb on - strand at 668.344 kb on - strand at 668.558 kb on + strand, within ECD_00638 at 668.599 kb on + strand, within ECD_00638 at 668.599 kb on + strand, within ECD_00638 at 668.600 kb on - strand, within ECD_00638 at 668.658 kb on + strand, within ECD_00638 at 668.719 kb on - strand, within ECD_00638 at 668.782 kb on - strand, within ECD_00638 at 669.188 kb on + strand, within ECD_00638 at 669.295 kb on - strand, within ECD_00638 at 669.342 kb on + strand, within ECD_00638 at 669.363 kb on - strand, within ECD_00638 at 669.450 kb on + strand, within ECD_00638 at 669.708 kb on - strand, within ECD_00639 at 669.979 kb on - strand at 670.076 kb on - strand at 670.293 kb on - strand, within ECD_00640
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 668,213 + +0.7 668,231 + +0.2 668,342 - -0.0 668,342 - +0.6 668,344 - +0.9 668,344 - +0.5 668,558 + ECD_00638 0.25 +0.5 668,599 + ECD_00638 0.28 +0.5 668,599 + ECD_00638 0.28 -0.8 668,600 - ECD_00638 0.28 -0.8 668,658 + ECD_00638 0.32 -0.1 668,719 - ECD_00638 0.36 -0.1 668,782 - ECD_00638 0.41 +0.7 669,188 + ECD_00638 0.70 +0.7 669,295 - ECD_00638 0.77 -0.4 669,342 + ECD_00638 0.81 -0.4 669,363 - ECD_00638 0.82 -0.1 669,450 + ECD_00638 0.88 +0.1 669,708 - ECD_00639 0.13 +0.6 669,979 - +1.9 670,076 - +0.2 670,293 - ECD_00640 0.49 +1.5
Or see this region's nucleotide sequence