Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00636 and ECD_00637 are separated by 202 nucleotides ECD_00637 and ECD_00638 are separated by 576 nucleotides
ECD_00636: ECD_00636 - N-acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components, at 663,818 to 665,764
_00636
ECD_00637: ECD_00637 - glutamyl-tRNA synthetase, at 665,967 to 667,631
_00637
ECD_00638: ECD_00638 - chitoporin, at 668,208 to 669,614
_00638
Position (kb) 665
666
667
668 Strain fitness (log2 ratio) -1
0
1 at 665.003 kb on + strand, within ECD_00636 at 665.003 kb on + strand, within ECD_00636 at 665.004 kb on - strand, within ECD_00636 at 665.004 kb on - strand, within ECD_00636 at 665.005 kb on + strand, within ECD_00636 at 665.053 kb on + strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.056 kb on + strand, within ECD_00636 at 665.056 kb on + strand, within ECD_00636 at 665.110 kb on + strand, within ECD_00636 at 665.111 kb on - strand, within ECD_00636 at 665.111 kb on - strand, within ECD_00636 at 665.292 kb on + strand, within ECD_00636 at 665.422 kb on + strand, within ECD_00636 at 665.422 kb on + strand, within ECD_00636 at 665.524 kb on + strand, within ECD_00636 at 665.564 kb on - strand, within ECD_00636 at 665.592 kb on + strand at 665.680 kb on + strand at 665.920 kb on + strand at 665.928 kb on + strand at 665.928 kb on + strand at 668.213 kb on + strand at 668.231 kb on + strand at 668.342 kb on - strand at 668.342 kb on - strand at 668.344 kb on - strand at 668.344 kb on - strand at 668.558 kb on + strand, within ECD_00638 at 668.599 kb on + strand, within ECD_00638 at 668.599 kb on + strand, within ECD_00638 at 668.600 kb on - strand, within ECD_00638
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 665,003 + ECD_00636 0.61 -0.9 665,003 + ECD_00636 0.61 -0.5 665,004 - ECD_00636 0.61 -1.1 665,004 - ECD_00636 0.61 +0.3 665,005 + ECD_00636 0.61 +0.2 665,053 + ECD_00636 0.63 +0.2 665,054 - ECD_00636 0.63 -0.5 665,054 - ECD_00636 0.63 +0.4 665,054 - ECD_00636 0.63 -0.2 665,056 + ECD_00636 0.64 -0.0 665,056 + ECD_00636 0.64 -0.2 665,110 + ECD_00636 0.66 -1.0 665,111 - ECD_00636 0.66 +0.0 665,111 - ECD_00636 0.66 -0.7 665,292 + ECD_00636 0.76 +0.6 665,422 + ECD_00636 0.82 +0.4 665,422 + ECD_00636 0.82 +0.2 665,524 + ECD_00636 0.88 -0.1 665,564 - ECD_00636 0.90 +0.2 665,592 + +0.5 665,680 + +1.7 665,920 + -0.3 665,928 + -0.3 665,928 + -0.8 668,213 + +0.7 668,231 + +0.2 668,342 - -0.0 668,342 - +0.6 668,344 - +0.9 668,344 - +0.5 668,558 + ECD_00638 0.25 +0.5 668,599 + ECD_00638 0.28 +0.5 668,599 + ECD_00638 0.28 -0.8 668,600 - ECD_00638 0.28 -0.8
Or see this region's nucleotide sequence