Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00635 and ECD_00636 are separated by 332 nucleotides ECD_00636 and ECD_00637 are separated by 202 nucleotides
ECD_00635: ECD_00635 - glucosamine-6-phosphate deaminase, at 662,685 to 663,485
_00635
ECD_00636: ECD_00636 - N-acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components, at 663,818 to 665,764
_00636
ECD_00637: ECD_00637 - glutamyl-tRNA synthetase, at 665,967 to 667,631
_00637
Position (kb) 663
664
665
666 Strain fitness (log2 ratio) -2
-1
0
1 at 662.827 kb on - strand, within ECD_00635 at 662.912 kb on + strand, within ECD_00635 at 662.913 kb on - strand, within ECD_00635 at 662.913 kb on - strand, within ECD_00635 at 663.104 kb on - strand, within ECD_00635 at 663.265 kb on + strand, within ECD_00635 at 663.340 kb on + strand, within ECD_00635 at 663.509 kb on + strand at 663.509 kb on + strand at 663.542 kb on - strand at 663.618 kb on + strand at 663.814 kb on + strand at 663.921 kb on + strand at 663.938 kb on - strand at 663.978 kb on + strand at 664.055 kb on + strand, within ECD_00636 at 664.055 kb on + strand, within ECD_00636 at 664.126 kb on + strand, within ECD_00636 at 664.152 kb on - strand, within ECD_00636 at 664.476 kb on - strand, within ECD_00636 at 664.799 kb on + strand, within ECD_00636 at 664.800 kb on - strand, within ECD_00636 at 664.865 kb on - strand, within ECD_00636 at 664.868 kb on + strand, within ECD_00636 at 664.869 kb on - strand, within ECD_00636 at 664.897 kb on + strand, within ECD_00636 at 664.897 kb on + strand, within ECD_00636 at 664.897 kb on + strand, within ECD_00636 at 665.003 kb on + strand, within ECD_00636 at 665.003 kb on + strand, within ECD_00636 at 665.004 kb on - strand, within ECD_00636 at 665.004 kb on - strand, within ECD_00636 at 665.005 kb on + strand, within ECD_00636 at 665.053 kb on + strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.054 kb on - strand, within ECD_00636 at 665.056 kb on + strand, within ECD_00636 at 665.056 kb on + strand, within ECD_00636 at 665.110 kb on + strand, within ECD_00636 at 665.111 kb on - strand, within ECD_00636 at 665.111 kb on - strand, within ECD_00636 at 665.292 kb on + strand, within ECD_00636 at 665.422 kb on + strand, within ECD_00636 at 665.422 kb on + strand, within ECD_00636 at 665.524 kb on + strand, within ECD_00636 at 665.564 kb on - strand, within ECD_00636 at 665.592 kb on + strand at 665.680 kb on + strand at 665.920 kb on + strand at 665.928 kb on + strand at 665.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 662,827 - ECD_00635 0.18 -2.0 662,912 + ECD_00635 0.28 -0.5 662,913 - ECD_00635 0.28 -0.8 662,913 - ECD_00635 0.28 +0.6 663,104 - ECD_00635 0.52 -0.0 663,265 + ECD_00635 0.72 -0.8 663,340 + ECD_00635 0.82 -1.6 663,509 + -1.3 663,509 + +0.5 663,542 - +0.1 663,618 + -1.5 663,814 + -0.8 663,921 + -0.3 663,938 - +1.0 663,978 + +0.7 664,055 + ECD_00636 0.12 -0.2 664,055 + ECD_00636 0.12 -0.1 664,126 + ECD_00636 0.16 +0.6 664,152 - ECD_00636 0.17 -0.2 664,476 - ECD_00636 0.34 -1.0 664,799 + ECD_00636 0.50 -0.7 664,800 - ECD_00636 0.50 +0.9 664,865 - ECD_00636 0.54 +0.1 664,868 + ECD_00636 0.54 -1.0 664,869 - ECD_00636 0.54 +0.3 664,897 + ECD_00636 0.55 +0.3 664,897 + ECD_00636 0.55 -0.1 664,897 + ECD_00636 0.55 -0.2 665,003 + ECD_00636 0.61 -0.9 665,003 + ECD_00636 0.61 -0.5 665,004 - ECD_00636 0.61 -1.1 665,004 - ECD_00636 0.61 +0.3 665,005 + ECD_00636 0.61 +0.2 665,053 + ECD_00636 0.63 +0.2 665,054 - ECD_00636 0.63 -0.5 665,054 - ECD_00636 0.63 +0.4 665,054 - ECD_00636 0.63 -0.2 665,056 + ECD_00636 0.64 -0.0 665,056 + ECD_00636 0.64 -0.2 665,110 + ECD_00636 0.66 -1.0 665,111 - ECD_00636 0.66 +0.0 665,111 - ECD_00636 0.66 -0.7 665,292 + ECD_00636 0.76 +0.6 665,422 + ECD_00636 0.82 +0.4 665,422 + ECD_00636 0.82 +0.2 665,524 + ECD_00636 0.88 -0.1 665,564 - ECD_00636 0.90 +0.2 665,592 + +0.5 665,680 + +1.7 665,920 + -0.3 665,928 + -0.3 665,928 + -0.8
Or see this region's nucleotide sequence