Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00599 and ECD_00600 are separated by 100 nucleotides ECD_00600 and ECD_00601 are separated by 109 nucleotides
ECD_00599: ECD_00599 - octanoyltransferase; octanoyl-[ACP]:protein N-octanoyltransferase, at 621,999 to 622,640
_00599
ECD_00600: ECD_00600 - UPF0250 family protein, at 622,741 to 623,004
_00600
ECD_00601: ECD_00601 - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5), at 623,114 to 624,325
_00601
Position (kb) 622
623
624 Strain fitness (log2 ratio) -1
0
1 at 622.683 kb on - strand at 622.685 kb on - strand at 622.785 kb on - strand, within ECD_00600 at 623.028 kb on - strand at 623.032 kb on - strand at 623.032 kb on - strand at 623.073 kb on - strand at 623.073 kb on - strand at 623.073 kb on - strand at 623.073 kb on - strand at 623.305 kb on - strand, within ECD_00601 at 623.305 kb on - strand, within ECD_00601 at 623.305 kb on - strand, within ECD_00601 at 623.305 kb on - strand, within ECD_00601 at 623.305 kb on - strand, within ECD_00601 at 623.305 kb on - strand, within ECD_00601 at 623.349 kb on + strand, within ECD_00601 at 623.350 kb on - strand, within ECD_00601 at 623.712 kb on - strand, within ECD_00601 at 623.763 kb on + strand, within ECD_00601 at 623.790 kb on - strand, within ECD_00601 at 623.790 kb on - strand, within ECD_00601 at 623.833 kb on - strand, within ECD_00601 at 623.833 kb on - strand, within ECD_00601 at 623.833 kb on - strand, within ECD_00601 at 623.923 kb on + strand, within ECD_00601
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 622,683 - +0.9 622,685 - -0.3 622,785 - ECD_00600 0.17 +1.5 623,028 - -0.5 623,032 - +0.7 623,032 - -0.3 623,073 - +0.2 623,073 - -0.8 623,073 - -0.1 623,073 - +0.2 623,305 - ECD_00601 0.16 +0.7 623,305 - ECD_00601 0.16 +1.5 623,305 - ECD_00601 0.16 +0.3 623,305 - ECD_00601 0.16 +0.2 623,305 - ECD_00601 0.16 +0.3 623,305 - ECD_00601 0.16 -0.7 623,349 + ECD_00601 0.19 +1.1 623,350 - ECD_00601 0.19 -0.1 623,712 - ECD_00601 0.49 +0.3 623,763 + ECD_00601 0.54 +1.4 623,790 - ECD_00601 0.56 +1.3 623,790 - ECD_00601 0.56 +0.1 623,833 - ECD_00601 0.59 +0.3 623,833 - ECD_00601 0.59 -0.2 623,833 - ECD_00601 0.59 +1.1 623,923 + ECD_00601 0.67 +0.5
Or see this region's nucleotide sequence