Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00583 and ECD_00584 are separated by 10 nucleotides ECD_00584 and ECD_00585 overlap by 4 nucleotides ECD_00585 and ECD_00586 are separated by 14 nucleotides
ECD_00583: ECD_00583 - citrate lyase, citrate-ACP transferase (alpha) subunit, at 607,869 to 609,401
_00583
ECD_00584: ECD_00584 - citrate lyase, citryl-ACP lyase (beta) subunit, at 609,412 to 610,320
_00584
ECD_00585: ECD_00585 - citrate lyase, acyl carrier (gamma) subunit, at 610,317 to 610,613
_00585
ECD_00586: ECD_00586 - citrate lyase ligase; [citrate [pro-3S]-lyase] ligase, at 610,628 to 611,686
_00586
Position (kb) 610
611 Strain fitness (log2 ratio) -1
0
1 at 609.547 kb on + strand, within ECD_00584 at 609.590 kb on + strand, within ECD_00584 at 609.822 kb on - strand, within ECD_00584 at 609.981 kb on + strand, within ECD_00584 at 610.294 kb on - strand at 610.448 kb on - strand, within ECD_00585 at 610.557 kb on + strand, within ECD_00585 at 610.558 kb on - strand, within ECD_00585 at 610.926 kb on - strand, within ECD_00586 at 611.017 kb on - strand, within ECD_00586 at 611.017 kb on - strand, within ECD_00586 at 611.046 kb on + strand, within ECD_00586 at 611.046 kb on + strand, within ECD_00586 at 611.046 kb on + strand, within ECD_00586 at 611.150 kb on + strand, within ECD_00586 at 611.199 kb on + strand, within ECD_00586 at 611.515 kb on + strand, within ECD_00586 at 611.515 kb on + strand, within ECD_00586 at 611.573 kb on + strand, within ECD_00586
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 609,547 + ECD_00584 0.15 -0.7 609,590 + ECD_00584 0.20 +0.4 609,822 - ECD_00584 0.45 +0.3 609,981 + ECD_00584 0.63 +0.1 610,294 - -0.6 610,448 - ECD_00585 0.44 +0.5 610,557 + ECD_00585 0.81 -1.7 610,558 - ECD_00585 0.81 +0.4 610,926 - ECD_00586 0.28 +0.4 611,017 - ECD_00586 0.37 -0.9 611,017 - ECD_00586 0.37 -0.4 611,046 + ECD_00586 0.39 -1.1 611,046 + ECD_00586 0.39 +0.1 611,046 + ECD_00586 0.39 +0.8 611,150 + ECD_00586 0.49 -0.5 611,199 + ECD_00586 0.54 +0.1 611,515 + ECD_00586 0.84 -1.1 611,515 + ECD_00586 0.84 +1.2 611,573 + ECD_00586 0.89 -0.1
Or see this region's nucleotide sequence