Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00539 and ECD_00540 are separated by 93 nucleotides ECD_00540 and ECD_00541 are separated by 64 nucleotides ECD_00541 and ECD_00542 are separated by 65 nucleotides ECD_00542 and ECD_00543 are separated by 268 nucleotides
ECD_00539: ECD_00539 - dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive, at 563,440 to 564,093
_00539
ECD_00540: ECD_00540 - DUF419 family protein, at 564,187 to 564,555
_00540
ECD_00541: ECD_00541 - DUF1158 family putative inner membrane protein, at 564,620 to 564,868
_00541
ECD_00542: ECD_00542 - weak gamma-glutamyl:cysteine ligase, at 564,934 to 566,052
_00542
ECD_00543: ECD_00543 - IS150 hypothetical protein, at 566,321 to 566,842
_00543
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -1
0
1 at 563.949 kb on + strand, within ECD_00539 at 563.988 kb on - strand, within ECD_00539 at 564.156 kb on - strand at 564.176 kb on - strand at 564.176 kb on - strand at 564.356 kb on - strand, within ECD_00540 at 564.436 kb on - strand, within ECD_00540 at 564.590 kb on + strand at 564.590 kb on + strand at 564.591 kb on - strand at 564.670 kb on - strand, within ECD_00541 at 564.868 kb on + strand at 564.884 kb on - strand at 564.935 kb on + strand at 565.432 kb on + strand, within ECD_00542 at 565.456 kb on - strand, within ECD_00542 at 565.542 kb on + strand, within ECD_00542 at 565.542 kb on + strand, within ECD_00542 at 565.542 kb on + strand, within ECD_00542 at 565.542 kb on + strand, within ECD_00542 at 565.543 kb on - strand, within ECD_00542 at 565.544 kb on + strand, within ECD_00542 at 565.545 kb on - strand, within ECD_00542 at 565.545 kb on - strand, within ECD_00542 at 565.607 kb on + strand, within ECD_00542 at 565.608 kb on - strand, within ECD_00542 at 565.723 kb on + strand, within ECD_00542 at 565.805 kb on - strand, within ECD_00542 at 565.963 kb on + strand at 566.085 kb on + strand at 566.086 kb on - strand at 566.087 kb on + strand at 566.179 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 563,949 + ECD_00539 0.78 -0.3 563,988 - ECD_00539 0.84 +0.7 564,156 - -0.6 564,176 - -1.1 564,176 - -1.2 564,356 - ECD_00540 0.46 +0.1 564,436 - ECD_00540 0.67 -1.2 564,590 + -1.3 564,590 + +0.5 564,591 - +0.3 564,670 - ECD_00541 0.20 +1.0 564,868 + +0.2 564,884 - +0.5 564,935 + +0.4 565,432 + ECD_00542 0.45 -0.2 565,456 - ECD_00542 0.47 +0.2 565,542 + ECD_00542 0.54 +1.5 565,542 + ECD_00542 0.54 +1.1 565,542 + ECD_00542 0.54 +0.2 565,542 + ECD_00542 0.54 +1.2 565,543 - ECD_00542 0.54 +0.2 565,544 + ECD_00542 0.55 -0.4 565,545 - ECD_00542 0.55 +0.8 565,545 - ECD_00542 0.55 +0.9 565,607 + ECD_00542 0.60 +0.2 565,608 - ECD_00542 0.60 -0.2 565,723 + ECD_00542 0.71 +0.7 565,805 - ECD_00542 0.78 +0.0 565,963 + -0.0 566,085 + -0.4 566,086 - +0.8 566,087 + -0.7 566,179 + -0.2
Or see this region's nucleotide sequence