Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00416 and ECD_00417 are separated by 211 nucleotides ECD_00417 and ECD_00418 are separated by 13 nucleotides ECD_00418 and ECD_00419 are separated by 69 nucleotides ECD_00419 and ECD_00420 are separated by 152 nucleotides ECD_00420 and ECD_00421 are separated by 128 nucleotides
ECD_00416: ECD_00416 - mechanosensitive channel protein, intermediate conductance, K+ regulated, at 455,582 to 458,944
_00416
ECD_00417: ECD_00417 - DUF2496 family protein, at 459,156 to 459,317
_00417
ECD_00418: ECD_00418 - primosomal replication protein N'', at 459,331 to 459,858
_00418
ECD_00419: ECD_00419 - DUF454 family inner membrane protein, at 459,928 to 460,305
_00419
ECD_00420: ECD_00420 - adenine phosphoribosyltransferase, at 460,458 to 461,009
_00420
ECD_00421: ECD_00421 - DNA polymerase III/DNA elongation factor III, tau and gamma subunits, at 461,138 to 463,069
_00421
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.965 kb on + strand at 459.059 kb on + strand at 459.076 kb on - strand at 459.127 kb on - strand at 459.137 kb on + strand at 459.138 kb on - strand at 459.151 kb on - strand at 459.184 kb on - strand, within ECD_00417 at 459.207 kb on + strand, within ECD_00417 at 459.207 kb on + strand, within ECD_00417 at 459.208 kb on - strand, within ECD_00417 at 459.208 kb on - strand, within ECD_00417 at 459.317 kb on + strand at 459.317 kb on + strand at 459.318 kb on - strand at 459.318 kb on - strand at 459.318 kb on - strand at 459.318 kb on - strand at 459.318 kb on - strand at 459.522 kb on + strand, within ECD_00418 at 459.522 kb on + strand, within ECD_00418 at 459.528 kb on + strand, within ECD_00418 at 459.889 kb on - strand at 459.928 kb on - strand at 459.944 kb on + strand at 459.945 kb on - strand at 460.103 kb on - strand, within ECD_00419 at 460.103 kb on - strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.258 kb on + strand, within ECD_00419 at 460.258 kb on + strand, within ECD_00419 at 460.258 kb on + strand, within ECD_00419 at 460.259 kb on - strand, within ECD_00419 at 460.259 kb on - strand, within ECD_00419 at 460.261 kb on - strand, within ECD_00419 at 460.261 kb on - strand, within ECD_00419 at 460.261 kb on - strand, within ECD_00419 at 460.408 kb on + strand at 460.451 kb on + strand at 460.451 kb on + strand at 460.452 kb on - strand at 460.452 kb on - strand at 460.457 kb on + strand at 460.457 kb on + strand at 460.458 kb on - strand at 460.496 kb on + strand at 460.612 kb on - strand, within ECD_00420 at 460.755 kb on + strand, within ECD_00420 at 460.980 kb on + strand at 460.980 kb on + strand at 460.981 kb on - strand at 460.981 kb on - strand at 461.007 kb on + strand at 461.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 458,965 + -0.5 459,059 + -0.3 459,076 - +0.0 459,127 - -0.2 459,137 + -0.3 459,138 - -0.6 459,151 - -1.0 459,184 - ECD_00417 0.17 -0.5 459,207 + ECD_00417 0.31 +0.3 459,207 + ECD_00417 0.31 -0.3 459,208 - ECD_00417 0.32 +0.7 459,208 - ECD_00417 0.32 +1.5 459,317 + +0.0 459,317 + -1.7 459,318 - +0.3 459,318 - -0.2 459,318 - -0.1 459,318 - -0.1 459,318 - -0.3 459,522 + ECD_00418 0.36 +0.0 459,522 + ECD_00418 0.36 +1.0 459,528 + ECD_00418 0.37 -0.3 459,889 - +0.7 459,928 - +0.9 459,944 + -0.2 459,945 - +0.0 460,103 - ECD_00419 0.46 +1.1 460,103 - ECD_00419 0.46 +0.3 460,106 + ECD_00419 0.47 +0.2 460,106 + ECD_00419 0.47 +0.3 460,106 + ECD_00419 0.47 -0.3 460,106 + ECD_00419 0.47 +0.3 460,106 + ECD_00419 0.47 -0.5 460,106 + ECD_00419 0.47 -0.2 460,258 + ECD_00419 0.87 -0.4 460,258 + ECD_00419 0.87 +0.5 460,258 + ECD_00419 0.87 +0.2 460,259 - ECD_00419 0.88 +0.5 460,259 - ECD_00419 0.88 +0.8 460,261 - ECD_00419 0.88 -0.2 460,261 - ECD_00419 0.88 +0.3 460,261 - ECD_00419 0.88 +0.5 460,408 + -0.3 460,451 + +1.0 460,451 + +0.5 460,452 - -0.6 460,452 - +0.5 460,457 + -0.2 460,457 + -0.8 460,458 - -0.3 460,496 + +0.3 460,612 - ECD_00420 0.28 -1.8 460,755 + ECD_00420 0.54 -1.0 460,980 + -0.7 460,980 + -0.2 460,981 - +1.8 460,981 - -0.2 461,007 + -0.7 461,008 - -0.3
Or see this region's nucleotide sequence