Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00401 and ECD_00402 are separated by 180 nucleotides ECD_00402 and ECD_00403 are separated by 29 nucleotides
ECD_00401: ECD_00401 - putative multidrug ABC transporter ATPase, at 439,682 to 441,463
_00401
ECD_00402: ECD_00402 - nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB, at 441,644 to 441,982
_00402
ECD_00403: ECD_00403 - ammonium transporter, at 442,012 to 443,298
_00403
Position (kb) 441
442 Strain fitness (log2 ratio) -2
-1
0
1 at 440.666 kb on + strand, within ECD_00401 at 440.762 kb on - strand, within ECD_00401 at 440.838 kb on + strand, within ECD_00401 at 440.895 kb on + strand, within ECD_00401 at 440.904 kb on + strand, within ECD_00401 at 440.904 kb on + strand, within ECD_00401 at 441.001 kb on + strand, within ECD_00401 at 441.001 kb on + strand, within ECD_00401 at 441.076 kb on + strand, within ECD_00401 at 441.080 kb on + strand, within ECD_00401 at 441.080 kb on + strand, within ECD_00401 at 441.256 kb on + strand, within ECD_00401 at 441.257 kb on - strand, within ECD_00401 at 441.395 kb on + strand at 441.395 kb on + strand at 441.395 kb on + strand at 441.396 kb on - strand at 441.396 kb on - strand at 441.396 kb on - strand at 441.517 kb on + strand at 441.518 kb on - strand at 441.594 kb on - strand at 441.643 kb on + strand at 441.644 kb on - strand at 441.644 kb on - strand at 441.644 kb on - strand at 441.715 kb on + strand, within ECD_00402 at 441.794 kb on + strand, within ECD_00402 at 442.113 kb on + strand at 442.262 kb on - strand, within ECD_00403 at 442.363 kb on + strand, within ECD_00403 at 442.369 kb on + strand, within ECD_00403 at 442.369 kb on + strand, within ECD_00403 at 442.495 kb on + strand, within ECD_00403 at 442.495 kb on + strand, within ECD_00403 at 442.581 kb on + strand, within ECD_00403 at 442.702 kb on + strand, within ECD_00403 at 442.702 kb on + strand, within ECD_00403 at 442.703 kb on - strand, within ECD_00403 at 442.703 kb on - strand, within ECD_00403 at 442.839 kb on + strand, within ECD_00403 at 442.909 kb on + strand, within ECD_00403 at 442.947 kb on - strand, within ECD_00403 at 442.977 kb on + strand, within ECD_00403 at 442.977 kb on + strand, within ECD_00403 at 442.978 kb on - strand, within ECD_00403
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 440,666 + ECD_00401 0.55 -0.8 440,762 - ECD_00401 0.61 +1.3 440,838 + ECD_00401 0.65 -0.3 440,895 + ECD_00401 0.68 -0.3 440,904 + ECD_00401 0.69 -0.2 440,904 + ECD_00401 0.69 +0.0 441,001 + ECD_00401 0.74 -0.2 441,001 + ECD_00401 0.74 +0.2 441,076 + ECD_00401 0.78 +0.6 441,080 + ECD_00401 0.78 +0.8 441,080 + ECD_00401 0.78 +1.0 441,256 + ECD_00401 0.88 +0.5 441,257 - ECD_00401 0.88 +1.5 441,395 + -0.4 441,395 + -0.7 441,395 + -0.5 441,396 - +0.4 441,396 - +0.6 441,396 - -1.8 441,517 + +0.2 441,518 - -0.2 441,594 - +0.9 441,643 + -0.2 441,644 - -0.2 441,644 - -0.4 441,644 - -1.3 441,715 + ECD_00402 0.21 +1.7 441,794 + ECD_00402 0.44 -0.1 442,113 + +0.2 442,262 - ECD_00403 0.19 +0.3 442,363 + ECD_00403 0.27 -0.6 442,369 + ECD_00403 0.28 -0.4 442,369 + ECD_00403 0.28 +0.5 442,495 + ECD_00403 0.38 -0.4 442,495 + ECD_00403 0.38 -0.6 442,581 + ECD_00403 0.44 -0.1 442,702 + ECD_00403 0.54 -1.0 442,702 + ECD_00403 0.54 +0.6 442,703 - ECD_00403 0.54 +0.8 442,703 - ECD_00403 0.54 +0.1 442,839 + ECD_00403 0.64 +0.2 442,909 + ECD_00403 0.70 -0.6 442,947 - ECD_00403 0.73 +1.5 442,977 + ECD_00403 0.75 +0.8 442,977 + ECD_00403 0.75 -0.0 442,978 - ECD_00403 0.75 -0.3
Or see this region's nucleotide sequence