Strain Fitness in Escherichia coli BL21 around ECD_00322

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00321 and ECD_00322 are separated by 87 nucleotidesECD_00322 and ECD_00323 are separated by 0 nucleotides ECD_00321: ECD_00321 - hypothetical protein, at 356,137 to 359,043 _00321 ECD_00322: ECD_00322 - putative transcriptional regulator, at 359,131 to 359,754 _00322 ECD_00323: ECD_00323 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase; penicillin-binding protein; weak beta-lactamase, at 359,755 to 360,912 _00323 Position (kb) 359 360Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 358.276 kb on + strand, within ECD_00321at 358.287 kb on + strand, within ECD_00321at 358.318 kb on + strand, within ECD_00321at 358.318 kb on + strand, within ECD_00321at 358.318 kb on + strand, within ECD_00321at 358.319 kb on - strand, within ECD_00321at 358.319 kb on - strand, within ECD_00321at 358.469 kb on - strand, within ECD_00321at 358.474 kb on + strand, within ECD_00321at 358.475 kb on - strand, within ECD_00321at 358.475 kb on - strand, within ECD_00321at 358.516 kb on - strand, within ECD_00321at 358.525 kb on + strand, within ECD_00321at 358.525 kb on + strand, within ECD_00321at 358.526 kb on - strand, within ECD_00321at 358.573 kb on + strand, within ECD_00321at 358.573 kb on + strand, within ECD_00321at 358.573 kb on + strand, within ECD_00321at 358.573 kb on + strand, within ECD_00321at 358.573 kb on + strand, within ECD_00321at 358.574 kb on - strand, within ECD_00321at 358.574 kb on - strand, within ECD_00321at 358.627 kb on + strand, within ECD_00321at 358.628 kb on - strand, within ECD_00321at 358.655 kb on - strand, within ECD_00321at 358.705 kb on + strand, within ECD_00321at 358.760 kb on - strandat 358.785 kb on + strandat 358.785 kb on + strandat 358.785 kb on + strandat 358.785 kb on + strandat 358.786 kb on - strandat 358.786 kb on - strandat 358.795 kb on + strandat 358.796 kb on - strandat 358.837 kb on + strandat 358.837 kb on + strandat 358.855 kb on - strandat 358.974 kb on + strandat 358.979 kb on - strandat 358.979 kb on - strandat 359.445 kb on + strand, within ECD_00322at 359.749 kb on + strandat 359.750 kb on - strandat 359.753 kb on - strandat 359.792 kb on - strandat 359.878 kb on - strand, within ECD_00323at 359.902 kb on - strand, within ECD_00323at 359.903 kb on + strand, within ECD_00323at 359.903 kb on + strand, within ECD_00323at 359.904 kb on - strand, within ECD_00323at 359.904 kb on - strand, within ECD_00323at 359.904 kb on - strand, within ECD_00323at 359.904 kb on - strand, within ECD_00323at 359.971 kb on - strand, within ECD_00323at 359.971 kb on - strand, within ECD_00323at 359.971 kb on - strand, within ECD_00323at 359.972 kb on + strand, within ECD_00323at 359.973 kb on - strand, within ECD_00323at 359.973 kb on - strand, within ECD_00323at 359.984 kb on - strand, within ECD_00323at 359.984 kb on - strand, within ECD_00323at 360.110 kb on + strand, within ECD_00323at 360.248 kb on + strand, within ECD_00323at 360.248 kb on + strand, within ECD_00323at 360.248 kb on + strand, within ECD_00323at 360.249 kb on - strand, within ECD_00323at 360.249 kb on - strand, within ECD_00323at 360.305 kb on + strand, within ECD_00323at 360.305 kb on + strand, within ECD_00323at 360.305 kb on + strand, within ECD_00323at 360.305 kb on + strand, within ECD_00323at 360.305 kb on + strand, within ECD_00323at 360.360 kb on + strand, within ECD_00323at 360.539 kb on + strand, within ECD_00323at 360.539 kb on + strand, within ECD_00323at 360.539 kb on + strand, within ECD_00323at 360.539 kb on + strand, within ECD_00323at 360.573 kb on + strand, within ECD_00323at 360.574 kb on - strand, within ECD_00323at 360.574 kb on - strand, within ECD_00323at 360.574 kb on - strand, within ECD_00323at 360.590 kb on - strand, within ECD_00323at 360.693 kb on + strand, within ECD_00323at 360.696 kb on + strand, within ECD_00323at 360.696 kb on + strand, within ECD_00323at 360.716 kb on + strand, within ECD_00323at 360.747 kb on + strand, within ECD_00323

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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358,276 + ECD_00321 0.74 -0.5
358,287 + ECD_00321 0.74 -0.2
358,318 + ECD_00321 0.75 -0.3
358,318 + ECD_00321 0.75 +1.3
358,318 + ECD_00321 0.75 -1.1
358,319 - ECD_00321 0.75 +0.8
358,319 - ECD_00321 0.75 +0.9
358,469 - ECD_00321 0.80 -1.9
358,474 + ECD_00321 0.80 -0.4
358,475 - ECD_00321 0.80 -0.8
358,475 - ECD_00321 0.80 -0.4
358,516 - ECD_00321 0.82 -0.3
358,525 + ECD_00321 0.82 -0.7
358,525 + ECD_00321 0.82 +0.8
358,526 - ECD_00321 0.82 -0.2
358,573 + ECD_00321 0.84 +0.4
358,573 + ECD_00321 0.84 -0.0
358,573 + ECD_00321 0.84 +0.1
358,573 + ECD_00321 0.84 +0.3
358,573 + ECD_00321 0.84 +0.4
358,574 - ECD_00321 0.84 -1.6
358,574 - ECD_00321 0.84 +0.7
358,627 + ECD_00321 0.86 +0.8
358,628 - ECD_00321 0.86 +0.5
358,655 - ECD_00321 0.87 +0.2
358,705 + ECD_00321 0.88 +1.3
358,760 - -0.5
358,785 + +0.3
358,785 + -0.6
358,785 + +1.3
358,785 + -1.1
358,786 - +0.7
358,786 - +0.3
358,795 + -0.6
358,796 - -1.4
358,837 + -0.1
358,837 + -1.4
358,855 - +0.1
358,974 + -0.1
358,979 - -1.1
358,979 - -1.8
359,445 + ECD_00322 0.50 -0.6
359,749 + -0.5
359,750 - +0.4
359,753 - -0.6
359,792 - +0.6
359,878 - ECD_00323 0.11 +1.5
359,902 - ECD_00323 0.13 -0.2
359,903 + ECD_00323 0.13 +1.1
359,903 + ECD_00323 0.13 +0.6
359,904 - ECD_00323 0.13 -0.9
359,904 - ECD_00323 0.13 +0.1
359,904 - ECD_00323 0.13 -0.1
359,904 - ECD_00323 0.13 +0.2
359,971 - ECD_00323 0.19 -0.2
359,971 - ECD_00323 0.19 +0.2
359,971 - ECD_00323 0.19 +1.1
359,972 + ECD_00323 0.19 -0.2
359,973 - ECD_00323 0.19 +0.8
359,973 - ECD_00323 0.19 +0.5
359,984 - ECD_00323 0.20 +0.3
359,984 - ECD_00323 0.20 +0.4
360,110 + ECD_00323 0.31 -2.8
360,248 + ECD_00323 0.43 +0.3
360,248 + ECD_00323 0.43 +0.5
360,248 + ECD_00323 0.43 +0.7
360,249 - ECD_00323 0.43 +0.5
360,249 - ECD_00323 0.43 +1.0
360,305 + ECD_00323 0.47 +0.9
360,305 + ECD_00323 0.47 -0.0
360,305 + ECD_00323 0.47 -0.1
360,305 + ECD_00323 0.47 +0.1
360,305 + ECD_00323 0.47 +2.2
360,360 + ECD_00323 0.52 +0.5
360,539 + ECD_00323 0.68 +0.1
360,539 + ECD_00323 0.68 -0.9
360,539 + ECD_00323 0.68 -0.5
360,539 + ECD_00323 0.68 +0.2
360,573 + ECD_00323 0.71 -0.2
360,574 - ECD_00323 0.71 -0.5
360,574 - ECD_00323 0.71 +1.5
360,574 - ECD_00323 0.71 -0.4
360,590 - ECD_00323 0.72 +1.5
360,693 + ECD_00323 0.81 +0.5
360,696 + ECD_00323 0.81 -1.1
360,696 + ECD_00323 0.81 +1.1
360,716 + ECD_00323 0.83 -0.8
360,747 + ECD_00323 0.86 +0.5

Or see this region's nucleotide sequence