Strain Fitness in Escherichia coli BL21 around ECD_00320

Experiment: N4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00319 and ECD_00320 are separated by 189 nucleotidesECD_00320 and ECD_00321 are separated by 135 nucleotides ECD_00319: ECD_00319 - 5-aminolevulinate dehydratase (porphobilinogen synthase), at 354,640 to 355,614 _00319 ECD_00320: ECD_00320 - hypothetical protein, at 355,804 to 356,001 _00320 ECD_00321: ECD_00321 - hypothetical protein, at 356,137 to 359,043 _00321 Position (kb) 355 356 357Strain fitness (log2 ratio) -1 0 1at 355.653 kb on - strandat 355.746 kb on - strandat 356.110 kb on + strandat 356.312 kb on + strandat 356.625 kb on + strand, within ECD_00321at 356.910 kb on + strand, within ECD_00321at 356.910 kb on + strand, within ECD_00321at 356.910 kb on + strand, within ECD_00321at 356.910 kb on + strand, within ECD_00321at 356.959 kb on + strand, within ECD_00321at 356.991 kb on + strand, within ECD_00321

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N4
remove
355,653 - +0.7
355,746 - +1.0
356,110 + +0.6
356,312 + +0.5
356,625 + ECD_00321 0.17 +0.3
356,910 + ECD_00321 0.27 -0.1
356,910 + ECD_00321 0.27 -0.8
356,910 + ECD_00321 0.27 +0.6
356,910 + ECD_00321 0.27 +0.1
356,959 + ECD_00321 0.28 +0.2
356,991 + ECD_00321 0.29 -0.3

Or see this region's nucleotide sequence