Strain Fitness in Escherichia coli BL21 around ECD_04198

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04197 and ECD_04198 are separated by 12 nucleotidesECD_04198 and ECD_04199 overlap by 4 nucleotidesECD_04199 and ECD_04200 are separated by 249 nucleotides ECD_04197: ECD_04197 - isoaspartyl dipeptidase, at 4,467,633 to 4,468,805 _04197 ECD_04198: ECD_04198 - SpmB family inner membrane protein, at 4,468,818 to 4,469,279 _04198 ECD_04199: ECD_04199 - nucleoside recognition pore and gate family putative inner membrane transporter, at 4,469,276 to 4,469,959 _04199 ECD_04200: ECD_04200 - RNA 2'-phosphotransferase, at 4,470,209 to 4,470,763 _04200 Position (kb) 4468 4469 4470Strain fitness (log2 ratio) -2 -1 0 1 2at 4467.845 kb on - strand, within ECD_04197at 4468.101 kb on + strand, within ECD_04197at 4468.101 kb on + strand, within ECD_04197at 4468.168 kb on + strand, within ECD_04197at 4468.168 kb on + strand, within ECD_04197at 4468.168 kb on + strand, within ECD_04197at 4468.168 kb on + strand, within ECD_04197at 4468.168 kb on + strand, within ECD_04197at 4468.169 kb on - strand, within ECD_04197at 4468.169 kb on - strand, within ECD_04197at 4468.169 kb on - strand, within ECD_04197at 4468.169 kb on - strand, within ECD_04197at 4468.169 kb on - strand, within ECD_04197at 4468.172 kb on + strand, within ECD_04197at 4468.172 kb on + strand, within ECD_04197at 4468.173 kb on - strand, within ECD_04197at 4468.191 kb on - strand, within ECD_04197at 4468.397 kb on - strand, within ECD_04197at 4468.481 kb on + strand, within ECD_04197at 4468.539 kb on + strand, within ECD_04197at 4468.613 kb on + strand, within ECD_04197at 4468.665 kb on + strand, within ECD_04197at 4468.753 kb on + strandat 4468.778 kb on + strandat 4468.779 kb on - strandat 4468.827 kb on - strandat 4468.827 kb on - strandat 4468.875 kb on - strand, within ECD_04198at 4468.880 kb on + strand, within ECD_04198at 4468.881 kb on - strand, within ECD_04198at 4468.891 kb on + strand, within ECD_04198at 4468.891 kb on + strand, within ECD_04198at 4468.957 kb on + strand, within ECD_04198at 4468.972 kb on - strand, within ECD_04198at 4469.107 kb on - strand, within ECD_04198at 4469.121 kb on - strand, within ECD_04198at 4469.121 kb on - strand, within ECD_04198at 4469.217 kb on - strand, within ECD_04198at 4469.247 kb on - strandat 4469.321 kb on - strandat 4469.375 kb on + strand, within ECD_04199at 4469.382 kb on - strand, within ECD_04199at 4469.434 kb on - strand, within ECD_04199at 4469.434 kb on - strand, within ECD_04199at 4469.434 kb on - strand, within ECD_04199at 4469.466 kb on + strand, within ECD_04199at 4469.531 kb on - strand, within ECD_04199at 4469.663 kb on - strand, within ECD_04199at 4469.873 kb on + strand, within ECD_04199at 4469.895 kb on + strandat 4470.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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4,467,845 - ECD_04197 0.18 +0.5
4,468,101 + ECD_04197 0.40 -0.9
4,468,101 + ECD_04197 0.40 -0.1
4,468,168 + ECD_04197 0.46 -0.3
4,468,168 + ECD_04197 0.46 -0.3
4,468,168 + ECD_04197 0.46 -0.6
4,468,168 + ECD_04197 0.46 +0.4
4,468,168 + ECD_04197 0.46 +0.1
4,468,169 - ECD_04197 0.46 +1.0
4,468,169 - ECD_04197 0.46 -0.3
4,468,169 - ECD_04197 0.46 +0.6
4,468,169 - ECD_04197 0.46 -0.3
4,468,169 - ECD_04197 0.46 -0.1
4,468,172 + ECD_04197 0.46 -0.5
4,468,172 + ECD_04197 0.46 +0.4
4,468,173 - ECD_04197 0.46 +2.3
4,468,191 - ECD_04197 0.48 +0.0
4,468,397 - ECD_04197 0.65 +0.4
4,468,481 + ECD_04197 0.72 +0.7
4,468,539 + ECD_04197 0.77 +0.1
4,468,613 + ECD_04197 0.84 +0.7
4,468,665 + ECD_04197 0.88 +0.1
4,468,753 + +0.9
4,468,778 + +0.1
4,468,779 - +0.6
4,468,827 - -0.3
4,468,827 - +0.2
4,468,875 - ECD_04198 0.12 +1.4
4,468,880 + ECD_04198 0.13 -2.6
4,468,881 - ECD_04198 0.14 +0.3
4,468,891 + ECD_04198 0.16 -1.7
4,468,891 + ECD_04198 0.16 -0.6
4,468,957 + ECD_04198 0.30 +1.9
4,468,972 - ECD_04198 0.33 -0.7
4,469,107 - ECD_04198 0.63 +0.3
4,469,121 - ECD_04198 0.66 +0.4
4,469,121 - ECD_04198 0.66 -0.1
4,469,217 - ECD_04198 0.86 -0.5
4,469,247 - +0.1
4,469,321 - -0.2
4,469,375 + ECD_04199 0.14 -0.8
4,469,382 - ECD_04199 0.15 +0.6
4,469,434 - ECD_04199 0.23 -0.5
4,469,434 - ECD_04199 0.23 +0.1
4,469,434 - ECD_04199 0.23 -0.7
4,469,466 + ECD_04199 0.28 +0.4
4,469,531 - ECD_04199 0.37 -0.6
4,469,663 - ECD_04199 0.57 -0.2
4,469,873 + ECD_04199 0.87 -0.1
4,469,895 + +0.5
4,470,218 + +0.8

Or see this region's nucleotide sequence