Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04037 and ECD_04038 overlap by 8 nucleotides ECD_04038 and ECD_04039 are separated by 85 nucleotides ECD_04039 and ECD_04040 are separated by 75 nucleotides
ECD_04037: ECD_04037 - methyl-directed mismatch repair protein, at 4,303,932 to 4,305,779
_04037
ECD_04038: ECD_04038 - delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase, at 4,305,772 to 4,306,722
_04038
ECD_04039: ECD_04039 - global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication, at 4,306,808 to 4,307,116
_04039
ECD_04040: ECD_04040 - GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator, at 4,307,192 to 4,308,472
_04040
Position (kb) 4305
4306
4307 Strain fitness (log2 ratio) -1
0
1
2 at 4304.802 kb on + strand, within ECD_04037 at 4304.803 kb on - strand, within ECD_04037 at 4304.894 kb on + strand, within ECD_04037 at 4304.898 kb on + strand, within ECD_04037 at 4304.899 kb on - strand, within ECD_04037 at 4304.920 kb on + strand, within ECD_04037 at 4304.920 kb on + strand, within ECD_04037 at 4304.921 kb on - strand, within ECD_04037 at 4305.057 kb on + strand, within ECD_04037 at 4305.057 kb on + strand, within ECD_04037 at 4305.251 kb on + strand, within ECD_04037 at 4305.305 kb on - strand, within ECD_04037 at 4305.431 kb on - strand, within ECD_04037 at 4305.431 kb on - strand, within ECD_04037 at 4305.559 kb on + strand, within ECD_04037 at 4305.559 kb on + strand, within ECD_04037 at 4305.560 kb on - strand, within ECD_04037 at 4305.691 kb on + strand at 4305.731 kb on - strand at 4305.878 kb on + strand, within ECD_04038 at 4305.906 kb on + strand, within ECD_04038 at 4305.906 kb on + strand, within ECD_04038 at 4305.984 kb on + strand, within ECD_04038 at 4306.710 kb on + strand at 4306.741 kb on + strand at 4306.785 kb on + strand at 4306.785 kb on + strand at 4306.785 kb on + strand at 4306.785 kb on + strand at 4306.791 kb on + strand at 4306.791 kb on + strand at 4306.987 kb on + strand, within ECD_04039 at 4307.023 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.065 kb on + strand, within ECD_04039 at 4307.080 kb on + strand, within ECD_04039 at 4307.173 kb on + strand at 4307.177 kb on + strand at 4307.185 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.240 kb on + strand at 4307.551 kb on + strand, within ECD_04040 at 4307.551 kb on + strand, within ECD_04040
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,304,802 + ECD_04037 0.47 -0.0 4,304,803 - ECD_04037 0.47 -0.1 4,304,894 + ECD_04037 0.52 -0.6 4,304,898 + ECD_04037 0.52 -1.4 4,304,899 - ECD_04037 0.52 -1.2 4,304,920 + ECD_04037 0.53 +1.2 4,304,920 + ECD_04037 0.53 -1.0 4,304,921 - ECD_04037 0.54 +1.3 4,305,057 + ECD_04037 0.61 +2.6 4,305,057 + ECD_04037 0.61 -0.5 4,305,251 + ECD_04037 0.71 -0.5 4,305,305 - ECD_04037 0.74 +0.3 4,305,431 - ECD_04037 0.81 +0.4 4,305,431 - ECD_04037 0.81 -0.7 4,305,559 + ECD_04037 0.88 +0.3 4,305,559 + ECD_04037 0.88 -0.1 4,305,560 - ECD_04037 0.88 -0.1 4,305,691 + -0.1 4,305,731 - -0.8 4,305,878 + ECD_04038 0.11 -1.0 4,305,906 + ECD_04038 0.14 +1.3 4,305,906 + ECD_04038 0.14 -1.0 4,305,984 + ECD_04038 0.22 -0.3 4,306,710 + -0.1 4,306,741 + -0.2 4,306,785 + +0.4 4,306,785 + -0.7 4,306,785 + +0.1 4,306,785 + -0.3 4,306,791 + +0.3 4,306,791 + -1.1 4,306,987 + ECD_04039 0.58 -1.0 4,307,023 + ECD_04039 0.70 -0.6 4,307,050 + ECD_04039 0.78 -0.1 4,307,050 + ECD_04039 0.78 +0.1 4,307,050 + ECD_04039 0.78 +0.2 4,307,050 + ECD_04039 0.78 -0.1 4,307,054 + ECD_04039 0.80 -0.5 4,307,054 + ECD_04039 0.80 +0.7 4,307,054 + ECD_04039 0.80 +0.4 4,307,054 + ECD_04039 0.80 +0.9 4,307,054 + ECD_04039 0.80 -0.4 4,307,054 + ECD_04039 0.80 -0.6 4,307,065 + ECD_04039 0.83 -0.0 4,307,080 + ECD_04039 0.88 +0.8 4,307,173 + +0.3 4,307,177 + -0.3 4,307,185 + +0.5 4,307,187 + +1.2 4,307,187 + -0.9 4,307,187 + +0.1 4,307,187 + -0.3 4,307,187 + -0.1 4,307,240 + +0.4 4,307,551 + ECD_04040 0.28 +0.1 4,307,551 + ECD_04040 0.28 +1.4
Or see this region's nucleotide sequence