Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04036 and ECD_04037 are separated by 9 nucleotides ECD_04037 and ECD_04038 overlap by 8 nucleotides
ECD_04036: ECD_04036 - N-acetylmuramoyl-l-alanine amidase II, at 4,302,585 to 4,303,922
_04036
ECD_04037: ECD_04037 - methyl-directed mismatch repair protein, at 4,303,932 to 4,305,779
_04037
ECD_04038: ECD_04038 - delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase, at 4,305,772 to 4,306,722
_04038
Position (kb)
4303
4304
4305
4306 Strain fitness (log2 ratio)
-1
0
1
2 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.940 kb on - strand, within ECD_04036 at 4302.940 kb on - strand, within ECD_04036 at 4303.080 kb on - strand, within ECD_04036 at 4303.106 kb on + strand, within ECD_04036 at 4303.107 kb on - strand, within ECD_04036 at 4303.107 kb on - strand, within ECD_04036 at 4303.110 kb on - strand, within ECD_04036 at 4303.110 kb on - strand, within ECD_04036 at 4303.154 kb on + strand, within ECD_04036 at 4303.160 kb on + strand, within ECD_04036 at 4303.293 kb on - strand, within ECD_04036 at 4303.325 kb on + strand, within ECD_04036 at 4303.325 kb on + strand, within ECD_04036 at 4303.358 kb on + strand, within ECD_04036 at 4303.358 kb on + strand, within ECD_04036 at 4303.359 kb on - strand, within ECD_04036 at 4303.559 kb on - strand, within ECD_04036 at 4303.603 kb on + strand, within ECD_04036 at 4303.608 kb on + strand, within ECD_04036 at 4303.608 kb on + strand, within ECD_04036 at 4303.608 kb on + strand, within ECD_04036 at 4303.615 kb on + strand, within ECD_04036 at 4303.616 kb on - strand, within ECD_04036 at 4303.625 kb on + strand, within ECD_04036 at 4303.657 kb on + strand, within ECD_04036 at 4303.657 kb on + strand, within ECD_04036 at 4303.657 kb on + strand, within ECD_04036 at 4303.658 kb on - strand, within ECD_04036 at 4303.658 kb on - strand, within ECD_04036 at 4303.661 kb on + strand, within ECD_04036 at 4303.662 kb on - strand, within ECD_04036 at 4303.740 kb on - strand, within ECD_04036 at 4303.810 kb on - strand at 4303.810 kb on - strand at 4303.887 kb on - strand at 4303.920 kb on + strand at 4303.949 kb on - strand at 4304.054 kb on + strand at 4304.055 kb on - strand at 4304.058 kb on + strand at 4304.301 kb on + strand, within ECD_04037 at 4304.301 kb on + strand, within ECD_04037 at 4304.332 kb on + strand, within ECD_04037 at 4304.385 kb on + strand, within ECD_04037 at 4304.385 kb on + strand, within ECD_04037 at 4304.386 kb on - strand, within ECD_04037 at 4304.435 kb on + strand, within ECD_04037 at 4304.567 kb on - strand, within ECD_04037 at 4304.695 kb on - strand, within ECD_04037 at 4304.700 kb on + strand, within ECD_04037 at 4304.802 kb on + strand, within ECD_04037 at 4304.803 kb on - strand, within ECD_04037 at 4304.894 kb on + strand, within ECD_04037 at 4304.898 kb on + strand, within ECD_04037 at 4304.899 kb on - strand, within ECD_04037 at 4304.920 kb on + strand, within ECD_04037 at 4304.920 kb on + strand, within ECD_04037 at 4304.921 kb on - strand, within ECD_04037 at 4305.057 kb on + strand, within ECD_04037 at 4305.057 kb on + strand, within ECD_04037 at 4305.251 kb on + strand, within ECD_04037 at 4305.305 kb on - strand, within ECD_04037 at 4305.431 kb on - strand, within ECD_04037 at 4305.431 kb on - strand, within ECD_04037 at 4305.559 kb on + strand, within ECD_04037 at 4305.559 kb on + strand, within ECD_04037 at 4305.560 kb on - strand, within ECD_04037 at 4305.691 kb on + strand at 4305.731 kb on - strand at 4305.878 kb on + strand, within ECD_04038 at 4305.906 kb on + strand, within ECD_04038 at 4305.906 kb on + strand, within ECD_04038 at 4305.984 kb on + strand, within ECD_04038 at 4306.710 kb on + strand at 4306.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,302,939 + ECD_04036 0.26 +0.2 4,302,939 + ECD_04036 0.26 +0.5 4,302,939 + ECD_04036 0.26 -0.1 4,302,939 + ECD_04036 0.26 +0.3 4,302,940 - ECD_04036 0.27 +1.1 4,302,940 - ECD_04036 0.27 +0.6 4,303,080 - ECD_04036 0.37 +0.2 4,303,106 + ECD_04036 0.39 +1.3 4,303,107 - ECD_04036 0.39 +0.2 4,303,107 - ECD_04036 0.39 -0.2 4,303,110 - ECD_04036 0.39 +0.4 4,303,110 - ECD_04036 0.39 +0.3 4,303,154 + ECD_04036 0.43 -0.4 4,303,160 + ECD_04036 0.43 +0.2 4,303,293 - ECD_04036 0.53 +0.1 4,303,325 + ECD_04036 0.55 +0.4 4,303,325 + ECD_04036 0.55 -0.2 4,303,358 + ECD_04036 0.58 -1.4 4,303,358 + ECD_04036 0.58 -0.0 4,303,359 - ECD_04036 0.58 -0.0 4,303,559 - ECD_04036 0.73 +1.1 4,303,603 + ECD_04036 0.76 +0.8 4,303,608 + ECD_04036 0.76 -0.1 4,303,608 + ECD_04036 0.76 +0.3 4,303,608 + ECD_04036 0.76 -0.2 4,303,615 + ECD_04036 0.77 -0.3 4,303,616 - ECD_04036 0.77 +0.3 4,303,625 + ECD_04036 0.78 +0.6 4,303,657 + ECD_04036 0.80 -0.4 4,303,657 + ECD_04036 0.80 -1.1 4,303,657 + ECD_04036 0.80 -0.1 4,303,658 - ECD_04036 0.80 +0.3 4,303,658 - ECD_04036 0.80 +0.6 4,303,661 + ECD_04036 0.80 +0.3 4,303,662 - ECD_04036 0.80 -0.3 4,303,740 - ECD_04036 0.86 +0.2 4,303,810 - +0.8 4,303,810 - +0.1 4,303,887 - -0.4 4,303,920 + +0.5 4,303,949 - +0.6 4,304,054 + -0.1 4,304,055 - -0.1 4,304,058 + -1.5 4,304,301 + ECD_04037 0.20 -0.3 4,304,301 + ECD_04037 0.20 +0.2 4,304,332 + ECD_04037 0.22 -0.0 4,304,385 + ECD_04037 0.25 +0.1 4,304,385 + ECD_04037 0.25 +0.1 4,304,386 - ECD_04037 0.25 -1.0 4,304,435 + ECD_04037 0.27 -0.2 4,304,567 - ECD_04037 0.34 -0.7 4,304,695 - ECD_04037 0.41 +0.5 4,304,700 + ECD_04037 0.42 -0.0 4,304,802 + ECD_04037 0.47 -0.0 4,304,803 - ECD_04037 0.47 -0.1 4,304,894 + ECD_04037 0.52 -0.6 4,304,898 + ECD_04037 0.52 -1.4 4,304,899 - ECD_04037 0.52 -1.2 4,304,920 + ECD_04037 0.53 +1.2 4,304,920 + ECD_04037 0.53 -1.0 4,304,921 - ECD_04037 0.54 +1.3 4,305,057 + ECD_04037 0.61 +2.6 4,305,057 + ECD_04037 0.61 -0.5 4,305,251 + ECD_04037 0.71 -0.5 4,305,305 - ECD_04037 0.74 +0.3 4,305,431 - ECD_04037 0.81 +0.4 4,305,431 - ECD_04037 0.81 -0.7 4,305,559 + ECD_04037 0.88 +0.3 4,305,559 + ECD_04037 0.88 -0.1 4,305,560 - ECD_04037 0.88 -0.1 4,305,691 + -0.1 4,305,731 - -0.8 4,305,878 + ECD_04038 0.11 -1.0 4,305,906 + ECD_04038 0.14 +1.3 4,305,906 + ECD_04038 0.14 -1.0 4,305,984 + ECD_04038 0.22 -0.3 4,306,710 + -0.1 4,306,741 + -0.2
Or see this region's nucleotide sequence