Strain Fitness in Escherichia coli BL21 around ECD_03953

Experiment: N4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03952 and ECD_03953 overlap by 4 nucleotidesECD_03953 and ECD_03954 overlap by 1 nucleotides ECD_03952: ECD_03952 - outer membrane factor of efflux pump, at 4,206,751 to 4,208,217 _03952 ECD_03953: ECD_03953 - membrane translocase (MDR) of MdtNOP efflux pump, PET family, at 4,208,214 to 4,210,265 _03953 ECD_03954: ECD_03954 - membrane fusion protein of efflux pump, at 4,210,265 to 4,211,296 _03954 Position (kb) 4208 4209 4210 4211Strain fitness (log2 ratio) -2 -1 0 1at 4207.334 kb on + strand, within ECD_03952at 4207.616 kb on + strand, within ECD_03952at 4207.630 kb on - strand, within ECD_03952at 4207.634 kb on + strand, within ECD_03952at 4207.634 kb on + strand, within ECD_03952at 4207.637 kb on + strand, within ECD_03952at 4207.666 kb on + strand, within ECD_03952at 4207.666 kb on + strand, within ECD_03952at 4207.672 kb on + strand, within ECD_03952at 4207.673 kb on - strand, within ECD_03952at 4207.777 kb on + strand, within ECD_03952at 4207.777 kb on + strand, within ECD_03952at 4207.777 kb on + strand, within ECD_03952at 4207.794 kb on - strand, within ECD_03952at 4207.797 kb on - strand, within ECD_03952at 4207.797 kb on - strand, within ECD_03952at 4207.844 kb on - strand, within ECD_03952at 4207.901 kb on - strand, within ECD_03952at 4207.901 kb on - strand, within ECD_03952at 4207.918 kb on + strand, within ECD_03952at 4207.987 kb on + strand, within ECD_03952at 4207.988 kb on - strand, within ECD_03952at 4208.134 kb on - strandat 4208.138 kb on - strandat 4208.317 kb on - strandat 4208.407 kb on + strandat 4208.408 kb on - strandat 4208.452 kb on - strand, within ECD_03953at 4208.637 kb on + strand, within ECD_03953at 4208.638 kb on - strand, within ECD_03953at 4208.638 kb on - strand, within ECD_03953at 4208.638 kb on - strand, within ECD_03953at 4208.639 kb on + strand, within ECD_03953at 4208.640 kb on - strand, within ECD_03953at 4208.640 kb on - strand, within ECD_03953at 4208.640 kb on - strand, within ECD_03953at 4208.653 kb on + strand, within ECD_03953at 4208.653 kb on + strand, within ECD_03953at 4208.654 kb on - strand, within ECD_03953at 4208.697 kb on + strand, within ECD_03953at 4208.698 kb on - strand, within ECD_03953at 4208.698 kb on - strand, within ECD_03953at 4208.702 kb on + strand, within ECD_03953at 4208.706 kb on + strand, within ECD_03953at 4208.707 kb on - strand, within ECD_03953at 4208.711 kb on + strand, within ECD_03953at 4208.711 kb on + strand, within ECD_03953at 4208.712 kb on - strand, within ECD_03953at 4208.712 kb on - strand, within ECD_03953at 4208.776 kb on + strand, within ECD_03953at 4208.846 kb on - strand, within ECD_03953at 4208.846 kb on - strand, within ECD_03953at 4208.911 kb on + strand, within ECD_03953at 4208.911 kb on + strand, within ECD_03953at 4208.911 kb on + strand, within ECD_03953at 4208.912 kb on - strand, within ECD_03953at 4208.912 kb on - strand, within ECD_03953at 4208.912 kb on - strand, within ECD_03953at 4208.960 kb on + strand, within ECD_03953at 4208.960 kb on + strand, within ECD_03953at 4208.961 kb on - strand, within ECD_03953at 4208.990 kb on + strand, within ECD_03953at 4208.990 kb on + strand, within ECD_03953at 4208.991 kb on - strand, within ECD_03953at 4208.991 kb on - strand, within ECD_03953at 4209.128 kb on + strand, within ECD_03953at 4209.129 kb on - strand, within ECD_03953at 4209.129 kb on - strand, within ECD_03953at 4209.163 kb on + strand, within ECD_03953at 4209.164 kb on - strand, within ECD_03953at 4209.164 kb on - strand, within ECD_03953at 4209.172 kb on + strand, within ECD_03953at 4209.217 kb on + strand, within ECD_03953at 4209.217 kb on + strand, within ECD_03953at 4209.218 kb on - strand, within ECD_03953at 4209.218 kb on - strand, within ECD_03953at 4209.218 kb on - strand, within ECD_03953at 4209.231 kb on - strand, within ECD_03953at 4209.231 kb on - strand, within ECD_03953at 4209.281 kb on + strand, within ECD_03953at 4209.306 kb on + strand, within ECD_03953at 4209.306 kb on + strand, within ECD_03953at 4209.307 kb on - strand, within ECD_03953at 4209.511 kb on + strand, within ECD_03953at 4209.517 kb on + strand, within ECD_03953at 4209.517 kb on + strand, within ECD_03953at 4209.517 kb on + strand, within ECD_03953at 4209.517 kb on + strand, within ECD_03953at 4209.773 kb on - strand, within ECD_03953at 4209.788 kb on + strand, within ECD_03953at 4209.789 kb on - strand, within ECD_03953at 4209.857 kb on + strand, within ECD_03953at 4209.970 kb on + strand, within ECD_03953at 4209.982 kb on + strand, within ECD_03953at 4210.375 kb on + strand, within ECD_03954at 4210.460 kb on - strand, within ECD_03954at 4210.510 kb on + strand, within ECD_03954at 4210.523 kb on - strand, within ECD_03954at 4210.560 kb on + strand, within ECD_03954at 4210.560 kb on + strand, within ECD_03954at 4210.561 kb on - strand, within ECD_03954at 4210.733 kb on + strand, within ECD_03954at 4210.733 kb on + strand, within ECD_03954at 4210.734 kb on - strand, within ECD_03954at 4210.778 kb on + strand, within ECD_03954at 4210.793 kb on - strand, within ECD_03954at 4210.891 kb on + strand, within ECD_03954at 4210.891 kb on + strand, within ECD_03954at 4210.891 kb on + strand, within ECD_03954at 4210.891 kb on + strand, within ECD_03954at 4210.892 kb on - strand, within ECD_03954at 4210.892 kb on - strand, within ECD_03954at 4211.118 kb on - strand, within ECD_03954at 4211.118 kb on - strand, within ECD_03954at 4211.156 kb on - strand, within ECD_03954at 4211.170 kb on - strand, within ECD_03954at 4211.179 kb on + strand, within ECD_03954at 4211.179 kb on + strand, within ECD_03954at 4211.179 kb on + strand, within ECD_03954at 4211.180 kb on - strand, within ECD_03954at 4211.180 kb on - strand, within ECD_03954at 4211.180 kb on - strand, within ECD_03954at 4211.180 kb on - strand, within ECD_03954at 4211.199 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N4
remove
4,207,334 + ECD_03952 0.40 +0.3
4,207,616 + ECD_03952 0.59 +0.6
4,207,630 - ECD_03952 0.60 +0.3
4,207,634 + ECD_03952 0.60 +0.7
4,207,634 + ECD_03952 0.60 -0.0
4,207,637 + ECD_03952 0.60 +0.2
4,207,666 + ECD_03952 0.62 +1.3
4,207,666 + ECD_03952 0.62 +0.5
4,207,672 + ECD_03952 0.63 -0.6
4,207,673 - ECD_03952 0.63 +0.2
4,207,777 + ECD_03952 0.70 -1.2
4,207,777 + ECD_03952 0.70 -0.3
4,207,777 + ECD_03952 0.70 -0.2
4,207,794 - ECD_03952 0.71 +1.3
4,207,797 - ECD_03952 0.71 -1.1
4,207,797 - ECD_03952 0.71 +0.4
4,207,844 - ECD_03952 0.75 -0.3
4,207,901 - ECD_03952 0.78 -0.3
4,207,901 - ECD_03952 0.78 +0.2
4,207,918 + ECD_03952 0.80 -0.0
4,207,987 + ECD_03952 0.84 +0.1
4,207,988 - ECD_03952 0.84 -0.5
4,208,134 - -0.1
4,208,138 - -0.3
4,208,317 - +0.0
4,208,407 + -1.8
4,208,408 - +0.7
4,208,452 - ECD_03953 0.12 +0.1
4,208,637 + ECD_03953 0.21 -0.2
4,208,638 - ECD_03953 0.21 +0.6
4,208,638 - ECD_03953 0.21 +0.6
4,208,638 - ECD_03953 0.21 +0.2
4,208,639 + ECD_03953 0.21 -0.1
4,208,640 - ECD_03953 0.21 +0.5
4,208,640 - ECD_03953 0.21 +0.1
4,208,640 - ECD_03953 0.21 -0.4
4,208,653 + ECD_03953 0.21 +0.1
4,208,653 + ECD_03953 0.21 -0.2
4,208,654 - ECD_03953 0.21 +0.1
4,208,697 + ECD_03953 0.24 +0.5
4,208,698 - ECD_03953 0.24 +1.1
4,208,698 - ECD_03953 0.24 -1.6
4,208,702 + ECD_03953 0.24 +0.4
4,208,706 + ECD_03953 0.24 +0.3
4,208,707 - ECD_03953 0.24 +0.1
4,208,711 + ECD_03953 0.24 +0.7
4,208,711 + ECD_03953 0.24 -0.3
4,208,712 - ECD_03953 0.24 -0.7
4,208,712 - ECD_03953 0.24 +0.7
4,208,776 + ECD_03953 0.27 -1.1
4,208,846 - ECD_03953 0.31 -0.3
4,208,846 - ECD_03953 0.31 -0.4
4,208,911 + ECD_03953 0.34 +0.6
4,208,911 + ECD_03953 0.34 -0.4
4,208,911 + ECD_03953 0.34 -0.4
4,208,912 - ECD_03953 0.34 -0.4
4,208,912 - ECD_03953 0.34 -0.6
4,208,912 - ECD_03953 0.34 -0.1
4,208,960 + ECD_03953 0.36 +0.3
4,208,960 + ECD_03953 0.36 +1.0
4,208,961 - ECD_03953 0.36 +0.2
4,208,990 + ECD_03953 0.38 -0.4
4,208,990 + ECD_03953 0.38 -0.3
4,208,991 - ECD_03953 0.38 +0.4
4,208,991 - ECD_03953 0.38 +0.7
4,209,128 + ECD_03953 0.45 -0.2
4,209,129 - ECD_03953 0.45 +0.0
4,209,129 - ECD_03953 0.45 -0.4
4,209,163 + ECD_03953 0.46 +0.2
4,209,164 - ECD_03953 0.46 +0.4
4,209,164 - ECD_03953 0.46 +0.0
4,209,172 + ECD_03953 0.47 +0.3
4,209,217 + ECD_03953 0.49 +0.2
4,209,217 + ECD_03953 0.49 +0.3
4,209,218 - ECD_03953 0.49 -0.2
4,209,218 - ECD_03953 0.49 -0.6
4,209,218 - ECD_03953 0.49 -0.5
4,209,231 - ECD_03953 0.50 -0.1
4,209,231 - ECD_03953 0.50 -0.2
4,209,281 + ECD_03953 0.52 -0.2
4,209,306 + ECD_03953 0.53 +0.6
4,209,306 + ECD_03953 0.53 +1.2
4,209,307 - ECD_03953 0.53 +1.0
4,209,511 + ECD_03953 0.63 -0.2
4,209,517 + ECD_03953 0.63 +0.2
4,209,517 + ECD_03953 0.63 +0.9
4,209,517 + ECD_03953 0.63 -0.2
4,209,517 + ECD_03953 0.63 +0.1
4,209,773 - ECD_03953 0.76 +0.0
4,209,788 + ECD_03953 0.77 +1.0
4,209,789 - ECD_03953 0.77 -1.2
4,209,857 + ECD_03953 0.80 -0.4
4,209,970 + ECD_03953 0.86 +0.5
4,209,982 + ECD_03953 0.86 +0.9
4,210,375 + ECD_03954 0.11 +0.2
4,210,460 - ECD_03954 0.19 +0.3
4,210,510 + ECD_03954 0.24 +0.3
4,210,523 - ECD_03954 0.25 -0.3
4,210,560 + ECD_03954 0.29 -0.2
4,210,560 + ECD_03954 0.29 +0.2
4,210,561 - ECD_03954 0.29 +1.2
4,210,733 + ECD_03954 0.45 -0.0
4,210,733 + ECD_03954 0.45 -0.3
4,210,734 - ECD_03954 0.45 +0.1
4,210,778 + ECD_03954 0.50 +0.8
4,210,793 - ECD_03954 0.51 -0.5
4,210,891 + ECD_03954 0.61 +0.3
4,210,891 + ECD_03954 0.61 -0.4
4,210,891 + ECD_03954 0.61 -0.8
4,210,891 + ECD_03954 0.61 +0.6
4,210,892 - ECD_03954 0.61 -0.6
4,210,892 - ECD_03954 0.61 +0.3
4,211,118 - ECD_03954 0.83 -0.2
4,211,118 - ECD_03954 0.83 +0.5
4,211,156 - ECD_03954 0.86 +0.1
4,211,170 - ECD_03954 0.88 +0.2
4,211,179 + ECD_03954 0.89 -0.1
4,211,179 + ECD_03954 0.89 -0.9
4,211,179 + ECD_03954 0.89 -1.0
4,211,180 - ECD_03954 0.89 +0.6
4,211,180 - ECD_03954 0.89 +0.7
4,211,180 - ECD_03954 0.89 +0.3
4,211,180 - ECD_03954 0.89 -0.5
4,211,199 - -0.3

Or see this region's nucleotide sequence