Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03950 and ECD_03951 are separated by 93 nucleotides ECD_03951 and ECD_03952 are separated by 197 nucleotides
ECD_03950: ECD_03950 - Sel1 family TPR-like repeat protein, at 4,203,623 to 4,204,312
_03950
ECD_03951: ECD_03951 - formate dehydrogenase-H, selenopolypeptide subunit, at 4,204,406 to 4,206,553
_03951
ECD_03952: ECD_03952 - outer membrane factor of efflux pump, at 4,206,751 to 4,208,217
_03952
Position (kb)
4204
4205
4206
4207 Strain fitness (log2 ratio)
-2
-1
0
1 at 4203.533 kb on + strand at 4203.620 kb on - strand at 4203.676 kb on + strand at 4203.677 kb on - strand at 4203.970 kb on + strand, within ECD_03950 at 4203.970 kb on + strand, within ECD_03950 at 4203.971 kb on - strand, within ECD_03950 at 4203.974 kb on + strand, within ECD_03950 at 4203.995 kb on + strand, within ECD_03950 at 4204.147 kb on - strand, within ECD_03950 at 4204.175 kb on - strand, within ECD_03950 at 4204.236 kb on + strand, within ECD_03950 at 4204.237 kb on - strand, within ECD_03950 at 4204.237 kb on - strand, within ECD_03950 at 4204.347 kb on + strand at 4204.347 kb on + strand at 4204.348 kb on - strand at 4204.404 kb on + strand at 4204.404 kb on + strand at 4204.404 kb on + strand at 4204.449 kb on + strand at 4204.449 kb on + strand at 4204.465 kb on - strand at 4204.516 kb on - strand at 4204.593 kb on + strand at 4204.593 kb on + strand at 4204.594 kb on - strand at 4204.594 kb on - strand at 4204.602 kb on + strand at 4204.602 kb on + strand at 4204.661 kb on - strand, within ECD_03951 at 4204.827 kb on - strand, within ECD_03951 at 4204.827 kb on - strand, within ECD_03951 at 4204.929 kb on + strand, within ECD_03951 at 4204.929 kb on + strand, within ECD_03951 at 4204.930 kb on - strand, within ECD_03951 at 4205.070 kb on + strand, within ECD_03951 at 4205.070 kb on + strand, within ECD_03951 at 4205.070 kb on + strand, within ECD_03951 at 4205.071 kb on - strand, within ECD_03951 at 4205.071 kb on - strand, within ECD_03951 at 4205.230 kb on + strand, within ECD_03951 at 4205.305 kb on + strand, within ECD_03951 at 4205.306 kb on - strand, within ECD_03951 at 4205.306 kb on - strand, within ECD_03951 at 4205.306 kb on - strand, within ECD_03951 at 4205.306 kb on - strand, within ECD_03951 at 4205.306 kb on - strand, within ECD_03951 at 4205.309 kb on + strand, within ECD_03951 at 4205.310 kb on - strand, within ECD_03951 at 4205.353 kb on + strand, within ECD_03951 at 4205.358 kb on + strand, within ECD_03951 at 4205.359 kb on - strand, within ECD_03951 at 4205.487 kb on + strand, within ECD_03951 at 4205.487 kb on + strand, within ECD_03951 at 4205.488 kb on - strand, within ECD_03951 at 4205.503 kb on - strand, within ECD_03951 at 4205.540 kb on + strand, within ECD_03951 at 4205.540 kb on + strand, within ECD_03951 at 4205.541 kb on - strand, within ECD_03951 at 4205.647 kb on - strand, within ECD_03951 at 4205.658 kb on - strand, within ECD_03951 at 4205.700 kb on + strand, within ECD_03951 at 4205.701 kb on - strand, within ECD_03951 at 4205.960 kb on - strand, within ECD_03951 at 4206.002 kb on + strand, within ECD_03951 at 4206.071 kb on - strand, within ECD_03951 at 4206.073 kb on + strand, within ECD_03951 at 4206.074 kb on - strand, within ECD_03951 at 4206.160 kb on + strand, within ECD_03951 at 4206.197 kb on + strand, within ECD_03951 at 4206.197 kb on + strand, within ECD_03951 at 4206.198 kb on - strand, within ECD_03951 at 4206.198 kb on - strand, within ECD_03951 at 4206.198 kb on - strand, within ECD_03951 at 4206.201 kb on + strand, within ECD_03951 at 4206.201 kb on + strand, within ECD_03951 at 4206.201 kb on + strand, within ECD_03951 at 4206.201 kb on + strand, within ECD_03951 at 4206.202 kb on - strand, within ECD_03951 at 4206.202 kb on - strand, within ECD_03951 at 4206.202 kb on - strand, within ECD_03951 at 4206.261 kb on + strand, within ECD_03951 at 4206.262 kb on - strand, within ECD_03951 at 4206.297 kb on + strand, within ECD_03951 at 4206.297 kb on + strand, within ECD_03951 at 4206.298 kb on - strand, within ECD_03951 at 4206.415 kb on - strand at 4206.415 kb on - strand at 4206.415 kb on - strand at 4206.415 kb on - strand at 4206.437 kb on - strand at 4206.526 kb on - strand at 4206.603 kb on + strand at 4206.603 kb on + strand at 4206.603 kb on + strand at 4206.604 kb on - strand at 4206.604 kb on - strand at 4206.604 kb on - strand at 4206.604 kb on - strand at 4206.627 kb on - strand at 4206.662 kb on + strand at 4206.663 kb on - strand at 4206.848 kb on - strand at 4207.059 kb on - strand, within ECD_03952 at 4207.059 kb on - strand, within ECD_03952 at 4207.059 kb on - strand, within ECD_03952 at 4207.059 kb on - strand, within ECD_03952 at 4207.059 kb on - strand, within ECD_03952 at 4207.334 kb on + strand, within ECD_03952
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,203,533 + +0.1 4,203,620 - -1.1 4,203,676 + +0.5 4,203,677 - +0.5 4,203,970 + ECD_03950 0.50 -1.5 4,203,970 + ECD_03950 0.50 -0.1 4,203,971 - ECD_03950 0.50 +0.2 4,203,974 + ECD_03950 0.51 -0.4 4,203,995 + ECD_03950 0.54 -0.5 4,204,147 - ECD_03950 0.76 +0.0 4,204,175 - ECD_03950 0.80 +0.1 4,204,236 + ECD_03950 0.89 -0.5 4,204,237 - ECD_03950 0.89 -0.5 4,204,237 - ECD_03950 0.89 -0.7 4,204,347 + -0.6 4,204,347 + +0.4 4,204,348 - +0.3 4,204,404 + -0.2 4,204,404 + +1.1 4,204,404 + -0.4 4,204,449 + -0.0 4,204,449 + -0.5 4,204,465 - -0.3 4,204,516 - +0.4 4,204,593 + +0.1 4,204,593 + -0.8 4,204,594 - +0.4 4,204,594 - +0.2 4,204,602 + +0.1 4,204,602 + -0.0 4,204,661 - ECD_03951 0.12 +0.3 4,204,827 - ECD_03951 0.20 -1.7 4,204,827 - ECD_03951 0.20 +0.2 4,204,929 + ECD_03951 0.24 -0.2 4,204,929 + ECD_03951 0.24 -0.4 4,204,930 - ECD_03951 0.24 +0.3 4,205,070 + ECD_03951 0.31 +0.1 4,205,070 + ECD_03951 0.31 +0.3 4,205,070 + ECD_03951 0.31 -0.2 4,205,071 - ECD_03951 0.31 +0.3 4,205,071 - ECD_03951 0.31 -0.4 4,205,230 + ECD_03951 0.38 +1.0 4,205,305 + ECD_03951 0.42 +0.9 4,205,306 - ECD_03951 0.42 +0.6 4,205,306 - ECD_03951 0.42 +0.4 4,205,306 - ECD_03951 0.42 -2.1 4,205,306 - ECD_03951 0.42 +0.1 4,205,306 - ECD_03951 0.42 +0.6 4,205,309 + ECD_03951 0.42 +0.4 4,205,310 - ECD_03951 0.42 -0.9 4,205,353 + ECD_03951 0.44 +0.1 4,205,358 + ECD_03951 0.44 +1.1 4,205,359 - ECD_03951 0.44 +0.0 4,205,487 + ECD_03951 0.50 +1.1 4,205,487 + ECD_03951 0.50 -0.8 4,205,488 - ECD_03951 0.50 +0.9 4,205,503 - ECD_03951 0.51 +0.6 4,205,540 + ECD_03951 0.53 +0.4 4,205,540 + ECD_03951 0.53 +1.3 4,205,541 - ECD_03951 0.53 -0.3 4,205,647 - ECD_03951 0.58 +0.5 4,205,658 - ECD_03951 0.58 +0.1 4,205,700 + ECD_03951 0.60 -0.7 4,205,701 - ECD_03951 0.60 -0.2 4,205,960 - ECD_03951 0.72 -0.1 4,206,002 + ECD_03951 0.74 +0.2 4,206,071 - ECD_03951 0.78 -0.3 4,206,073 + ECD_03951 0.78 +0.4 4,206,074 - ECD_03951 0.78 -0.2 4,206,160 + ECD_03951 0.82 -0.6 4,206,197 + ECD_03951 0.83 -0.4 4,206,197 + ECD_03951 0.83 +0.1 4,206,198 - ECD_03951 0.83 -0.0 4,206,198 - ECD_03951 0.83 -0.8 4,206,198 - ECD_03951 0.83 +0.0 4,206,201 + ECD_03951 0.84 +1.0 4,206,201 + ECD_03951 0.84 -0.3 4,206,201 + ECD_03951 0.84 -0.2 4,206,201 + ECD_03951 0.84 -1.1 4,206,202 - ECD_03951 0.84 +0.5 4,206,202 - ECD_03951 0.84 -1.3 4,206,202 - ECD_03951 0.84 -0.2 4,206,261 + ECD_03951 0.86 +1.4 4,206,262 - ECD_03951 0.86 +0.8 4,206,297 + ECD_03951 0.88 +0.0 4,206,297 + ECD_03951 0.88 +1.0 4,206,298 - ECD_03951 0.88 +0.3 4,206,415 - -0.5 4,206,415 - -0.7 4,206,415 - -0.0 4,206,415 - +0.1 4,206,437 - -1.2 4,206,526 - -0.5 4,206,603 + +0.4 4,206,603 + +0.6 4,206,603 + -0.5 4,206,604 - -0.0 4,206,604 - +0.4 4,206,604 - +0.9 4,206,604 - -0.4 4,206,627 - +0.3 4,206,662 + +0.4 4,206,663 - +0.3 4,206,848 - +0.1 4,207,059 - ECD_03952 0.21 -0.1 4,207,059 - ECD_03952 0.21 +0.3 4,207,059 - ECD_03952 0.21 +0.2 4,207,059 - ECD_03952 0.21 +1.2 4,207,059 - ECD_03952 0.21 +0.3 4,207,334 + ECD_03952 0.40 +0.3
Or see this region's nucleotide sequence