Strain Fitness in Escherichia coli BL21 around ECD_03939

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03939 and ECD_03940 overlap by 4 nucleotidesECD_03940 and ECD_03941 are separated by 200 nucleotides ECD_03939: ECD_03939 - acetate transporter, at 4,190,664 to 4,192,313 _03939 ECD_03940: ECD_03940 - DUF485 family inner membrane protein, at 4,192,310 to 4,192,624 _03940 ECD_03941: ECD_03941 - acetyl-CoA synthetase, at 4,192,825 to 4,194,783 _03941 Position (kb) 4190 4191 4192 4193Strain fitness (log2 ratio) -1 0 1 2at 4190.405 kb on + strandat 4190.497 kb on + strandat 4190.522 kb on + strandat 4190.630 kb on - strandat 4190.805 kb on - strandat 4190.892 kb on + strand, within ECD_03939at 4190.892 kb on + strand, within ECD_03939at 4190.892 kb on + strand, within ECD_03939at 4190.893 kb on - strand, within ECD_03939at 4190.893 kb on - strand, within ECD_03939at 4190.959 kb on + strand, within ECD_03939at 4190.959 kb on + strand, within ECD_03939at 4190.963 kb on + strand, within ECD_03939at 4190.963 kb on + strand, within ECD_03939at 4190.963 kb on + strand, within ECD_03939at 4190.963 kb on + strand, within ECD_03939at 4190.963 kb on + strand, within ECD_03939at 4190.987 kb on + strand, within ECD_03939at 4190.988 kb on - strand, within ECD_03939at 4191.035 kb on + strand, within ECD_03939at 4191.035 kb on + strand, within ECD_03939at 4191.063 kb on - strand, within ECD_03939at 4191.088 kb on - strand, within ECD_03939at 4191.151 kb on + strand, within ECD_03939at 4191.151 kb on + strand, within ECD_03939at 4191.152 kb on - strand, within ECD_03939at 4191.374 kb on + strand, within ECD_03939at 4191.374 kb on + strand, within ECD_03939at 4191.387 kb on - strand, within ECD_03939at 4191.388 kb on + strand, within ECD_03939at 4191.389 kb on - strand, within ECD_03939at 4191.389 kb on - strand, within ECD_03939at 4191.401 kb on + strand, within ECD_03939at 4191.416 kb on - strand, within ECD_03939at 4191.428 kb on + strand, within ECD_03939at 4191.428 kb on + strand, within ECD_03939at 4191.428 kb on + strand, within ECD_03939at 4191.428 kb on + strand, within ECD_03939at 4191.429 kb on - strand, within ECD_03939at 4191.455 kb on + strand, within ECD_03939at 4191.617 kb on + strand, within ECD_03939at 4191.618 kb on - strand, within ECD_03939at 4191.641 kb on + strand, within ECD_03939at 4191.642 kb on - strand, within ECD_03939at 4191.670 kb on - strand, within ECD_03939at 4191.686 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.730 kb on + strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.731 kb on - strand, within ECD_03939at 4191.777 kb on - strand, within ECD_03939at 4191.827 kb on + strand, within ECD_03939at 4191.833 kb on - strand, within ECD_03939at 4191.906 kb on + strand, within ECD_03939at 4191.907 kb on - strand, within ECD_03939at 4191.922 kb on + strand, within ECD_03939at 4192.003 kb on - strand, within ECD_03939at 4192.013 kb on - strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.066 kb on + strand, within ECD_03939at 4192.067 kb on - strand, within ECD_03939at 4192.067 kb on - strand, within ECD_03939at 4192.067 kb on - strand, within ECD_03939at 4192.067 kb on - strand, within ECD_03939at 4192.124 kb on - strand, within ECD_03939at 4192.124 kb on - strand, within ECD_03939at 4192.124 kb on - strand, within ECD_03939at 4192.126 kb on + strand, within ECD_03939at 4192.202 kb on + strandat 4192.203 kb on - strandat 4192.203 kb on - strandat 4192.322 kb on + strandat 4192.342 kb on + strand, within ECD_03940at 4192.380 kb on + strand, within ECD_03940at 4192.380 kb on + strand, within ECD_03940at 4192.380 kb on + strand, within ECD_03940at 4192.381 kb on - strand, within ECD_03940at 4192.500 kb on - strand, within ECD_03940at 4192.516 kb on - strand, within ECD_03940at 4192.528 kb on + strand, within ECD_03940at 4192.571 kb on + strand, within ECD_03940at 4192.642 kb on + strandat 4192.642 kb on + strandat 4192.643 kb on - strandat 4192.733 kb on + strandat 4192.733 kb on + strandat 4192.733 kb on + strandat 4192.734 kb on - strandat 4192.788 kb on + strandat 4192.788 kb on + strandat 4192.944 kb on + strandat 4193.057 kb on + strand, within ECD_03941at 4193.089 kb on - strand, within ECD_03941at 4193.105 kb on + strand, within ECD_03941at 4193.106 kb on - strand, within ECD_03941at 4193.106 kb on - strand, within ECD_03941at 4193.124 kb on + strand, within ECD_03941at 4193.136 kb on + strand, within ECD_03941at 4193.136 kb on + strand, within ECD_03941at 4193.143 kb on + strand, within ECD_03941at 4193.143 kb on + strand, within ECD_03941at 4193.255 kb on + strand, within ECD_03941at 4193.255 kb on + strand, within ECD_03941at 4193.259 kb on - strand, within ECD_03941at 4193.259 kb on - strand, within ECD_03941at 4193.302 kb on - strand, within ECD_03941at 4193.302 kb on - strand, within ECD_03941

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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4,190,405 + +0.4
4,190,497 + -0.4
4,190,522 + +1.2
4,190,630 - +0.1
4,190,805 - -0.2
4,190,892 + ECD_03939 0.14 +0.8
4,190,892 + ECD_03939 0.14 +1.1
4,190,892 + ECD_03939 0.14 -0.0
4,190,893 - ECD_03939 0.14 -0.0
4,190,893 - ECD_03939 0.14 -1.3
4,190,959 + ECD_03939 0.18 +0.1
4,190,959 + ECD_03939 0.18 -0.4
4,190,963 + ECD_03939 0.18 -0.9
4,190,963 + ECD_03939 0.18 -0.3
4,190,963 + ECD_03939 0.18 -0.0
4,190,963 + ECD_03939 0.18 -0.5
4,190,963 + ECD_03939 0.18 -0.9
4,190,987 + ECD_03939 0.20 +0.2
4,190,988 - ECD_03939 0.20 -0.4
4,191,035 + ECD_03939 0.22 -0.2
4,191,035 + ECD_03939 0.22 +1.3
4,191,063 - ECD_03939 0.24 +0.0
4,191,088 - ECD_03939 0.26 -0.5
4,191,151 + ECD_03939 0.30 -0.1
4,191,151 + ECD_03939 0.30 +0.4
4,191,152 - ECD_03939 0.30 -0.4
4,191,374 + ECD_03939 0.43 -0.2
4,191,374 + ECD_03939 0.43 -0.9
4,191,387 - ECD_03939 0.44 +0.4
4,191,388 + ECD_03939 0.44 +0.0
4,191,389 - ECD_03939 0.44 +0.0
4,191,389 - ECD_03939 0.44 +0.4
4,191,401 + ECD_03939 0.45 -0.5
4,191,416 - ECD_03939 0.46 +0.0
4,191,428 + ECD_03939 0.46 -1.0
4,191,428 + ECD_03939 0.46 -0.7
4,191,428 + ECD_03939 0.46 +0.2
4,191,428 + ECD_03939 0.46 +0.4
4,191,429 - ECD_03939 0.46 +0.1
4,191,455 + ECD_03939 0.48 -0.1
4,191,617 + ECD_03939 0.58 +0.3
4,191,618 - ECD_03939 0.58 +0.5
4,191,641 + ECD_03939 0.59 -0.1
4,191,642 - ECD_03939 0.59 -0.1
4,191,670 - ECD_03939 0.61 +0.9
4,191,686 + ECD_03939 0.62 -0.2
4,191,730 + ECD_03939 0.65 +0.6
4,191,730 + ECD_03939 0.65 -0.2
4,191,730 + ECD_03939 0.65 -1.3
4,191,730 + ECD_03939 0.65 +0.4
4,191,730 + ECD_03939 0.65 -0.1
4,191,730 + ECD_03939 0.65 -0.0
4,191,730 + ECD_03939 0.65 +0.7
4,191,730 + ECD_03939 0.65 -0.5
4,191,730 + ECD_03939 0.65 -0.3
4,191,730 + ECD_03939 0.65 -0.2
4,191,730 + ECD_03939 0.65 -0.0
4,191,730 + ECD_03939 0.65 +0.2
4,191,730 + ECD_03939 0.65 -0.2
4,191,731 - ECD_03939 0.65 +0.5
4,191,731 - ECD_03939 0.65 +2.4
4,191,731 - ECD_03939 0.65 -0.3
4,191,731 - ECD_03939 0.65 -0.1
4,191,731 - ECD_03939 0.65 -0.4
4,191,731 - ECD_03939 0.65 +0.4
4,191,731 - ECD_03939 0.65 +0.1
4,191,731 - ECD_03939 0.65 -0.3
4,191,731 - ECD_03939 0.65 +0.1
4,191,731 - ECD_03939 0.65 -0.3
4,191,731 - ECD_03939 0.65 +0.5
4,191,731 - ECD_03939 0.65 +0.2
4,191,731 - ECD_03939 0.65 +0.4
4,191,731 - ECD_03939 0.65 -0.5
4,191,731 - ECD_03939 0.65 -0.1
4,191,731 - ECD_03939 0.65 -0.0
4,191,731 - ECD_03939 0.65 -0.4
4,191,777 - ECD_03939 0.67 +0.4
4,191,827 + ECD_03939 0.70 -0.6
4,191,833 - ECD_03939 0.71 +0.2
4,191,906 + ECD_03939 0.75 -0.1
4,191,907 - ECD_03939 0.75 -0.1
4,191,922 + ECD_03939 0.76 -0.1
4,192,003 - ECD_03939 0.81 -0.3
4,192,013 - ECD_03939 0.82 +0.0
4,192,066 + ECD_03939 0.85 -0.0
4,192,066 + ECD_03939 0.85 -0.1
4,192,066 + ECD_03939 0.85 +0.4
4,192,066 + ECD_03939 0.85 -0.2
4,192,066 + ECD_03939 0.85 -1.2
4,192,066 + ECD_03939 0.85 -0.1
4,192,067 - ECD_03939 0.85 -0.2
4,192,067 - ECD_03939 0.85 -0.6
4,192,067 - ECD_03939 0.85 -0.2
4,192,067 - ECD_03939 0.85 +0.4
4,192,124 - ECD_03939 0.88 -0.3
4,192,124 - ECD_03939 0.88 -0.7
4,192,124 - ECD_03939 0.88 +0.3
4,192,126 + ECD_03939 0.89 +0.7
4,192,202 + +0.3
4,192,203 - +0.7
4,192,203 - -0.0
4,192,322 + -0.2
4,192,342 + ECD_03940 0.10 -0.1
4,192,380 + ECD_03940 0.22 -1.3
4,192,380 + ECD_03940 0.22 +0.2
4,192,380 + ECD_03940 0.22 +0.2
4,192,381 - ECD_03940 0.23 +0.6
4,192,500 - ECD_03940 0.60 +0.7
4,192,516 - ECD_03940 0.65 +0.4
4,192,528 + ECD_03940 0.69 +0.4
4,192,571 + ECD_03940 0.83 +0.1
4,192,642 + -0.5
4,192,642 + -0.1
4,192,643 - -0.2
4,192,733 + -0.2
4,192,733 + -0.7
4,192,733 + +0.6
4,192,734 - -0.4
4,192,788 + -0.2
4,192,788 + +0.4
4,192,944 + +0.4
4,193,057 + ECD_03941 0.12 -0.1
4,193,089 - ECD_03941 0.13 -0.8
4,193,105 + ECD_03941 0.14 +0.3
4,193,106 - ECD_03941 0.14 +0.4
4,193,106 - ECD_03941 0.14 +0.7
4,193,124 + ECD_03941 0.15 +0.1
4,193,136 + ECD_03941 0.16 -1.6
4,193,136 + ECD_03941 0.16 -0.7
4,193,143 + ECD_03941 0.16 -0.3
4,193,143 + ECD_03941 0.16 +0.4
4,193,255 + ECD_03941 0.22 -0.3
4,193,255 + ECD_03941 0.22 -0.4
4,193,259 - ECD_03941 0.22 -0.5
4,193,259 - ECD_03941 0.22 -0.1
4,193,302 - ECD_03941 0.24 -0.6
4,193,302 - ECD_03941 0.24 -0.5

Or see this region's nucleotide sequence