Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03867 and ECD_03868 are separated by 1 nucleotides ECD_03868 and ECD_03869 overlap by 17 nucleotides ECD_03869 and ECD_03870 overlap by 8 nucleotides ECD_03870 and ECD_03871 overlap by 1 nucleotides
ECD_03867: ECD_03867 - thiamine biosynthesis ThiGH complex subunit, at 4,099,916 to 4,100,686
_03867
ECD_03868: ECD_03868 - immediate sulfur donor in thiazole formation, at 4,100,688 to 4,100,888
_03868
ECD_03869: ECD_03869 - adenylyltransferase, modifies ThiS C-terminus, at 4,100,872 to 4,101,627
_03869
ECD_03870: ECD_03870 - thiamine phosphate synthase (thiamine phosphate pyrophosphorylase), at 4,101,620 to 4,102,255
_03870
ECD_03871: ECD_03871 - phosphomethylpyrimidine synthase, at 4,102,255 to 4,104,150
_03871
Position (kb)
4101
4102
4103 Strain fitness (log2 ratio)
-1
0
1 at 4100.678 kb on - strand at 4100.678 kb on - strand at 4100.682 kb on - strand at 4100.741 kb on + strand, within ECD_03868 at 4100.741 kb on + strand, within ECD_03868 at 4100.742 kb on - strand, within ECD_03868 at 4100.826 kb on + strand, within ECD_03868 at 4100.992 kb on + strand, within ECD_03869 at 4100.993 kb on - strand, within ECD_03869 at 4100.993 kb on - strand, within ECD_03869 at 4101.001 kb on + strand, within ECD_03869 at 4101.005 kb on - strand, within ECD_03869 at 4101.005 kb on - strand, within ECD_03869 at 4101.005 kb on - strand, within ECD_03869 at 4101.009 kb on + strand, within ECD_03869 at 4101.010 kb on - strand, within ECD_03869 at 4101.099 kb on + strand, within ECD_03869 at 4101.189 kb on + strand, within ECD_03869 at 4101.223 kb on - strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.319 kb on + strand, within ECD_03869 at 4101.320 kb on - strand, within ECD_03869 at 4101.320 kb on - strand, within ECD_03869 at 4101.320 kb on - strand, within ECD_03869 at 4101.320 kb on - strand, within ECD_03869 at 4101.320 kb on - strand, within ECD_03869 at 4101.491 kb on + strand, within ECD_03869 at 4101.507 kb on + strand, within ECD_03869 at 4101.600 kb on + strand at 4101.600 kb on + strand at 4101.610 kb on - strand at 4101.709 kb on + strand, within ECD_03870 at 4101.881 kb on - strand, within ECD_03870 at 4101.881 kb on - strand, within ECD_03870 at 4101.881 kb on - strand, within ECD_03870 at 4101.882 kb on + strand, within ECD_03870 at 4101.882 kb on + strand, within ECD_03870 at 4101.882 kb on + strand, within ECD_03870 at 4101.882 kb on + strand, within ECD_03870 at 4101.883 kb on - strand, within ECD_03870 at 4101.883 kb on - strand, within ECD_03870 at 4101.883 kb on - strand, within ECD_03870 at 4101.883 kb on - strand, within ECD_03870 at 4102.015 kb on - strand, within ECD_03870 at 4102.072 kb on - strand, within ECD_03870 at 4102.072 kb on - strand, within ECD_03870 at 4102.072 kb on - strand, within ECD_03870 at 4102.142 kb on + strand, within ECD_03870 at 4102.142 kb on + strand, within ECD_03870 at 4102.142 kb on + strand, within ECD_03870 at 4102.143 kb on - strand, within ECD_03870 at 4102.153 kb on + strand, within ECD_03870 at 4102.154 kb on - strand, within ECD_03870 at 4102.157 kb on + strand, within ECD_03870 at 4102.157 kb on + strand, within ECD_03870 at 4102.158 kb on - strand, within ECD_03870 at 4102.158 kb on - strand, within ECD_03870 at 4102.190 kb on + strand, within ECD_03870 at 4102.191 kb on - strand, within ECD_03870 at 4102.191 kb on - strand, within ECD_03870 at 4102.191 kb on - strand, within ECD_03870 at 4102.191 kb on - strand, within ECD_03870 at 4102.229 kb on + strand at 4102.251 kb on + strand at 4102.251 kb on + strand at 4102.251 kb on + strand at 4102.252 kb on - strand at 4102.252 kb on - strand at 4102.315 kb on - strand at 4102.335 kb on + strand at 4102.457 kb on + strand, within ECD_03871 at 4102.457 kb on + strand, within ECD_03871 at 4102.599 kb on + strand, within ECD_03871 at 4102.599 kb on + strand, within ECD_03871 at 4102.601 kb on + strand, within ECD_03871 at 4102.601 kb on + strand, within ECD_03871 at 4102.601 kb on + strand, within ECD_03871 at 4102.602 kb on - strand, within ECD_03871 at 4102.602 kb on - strand, within ECD_03871 at 4102.602 kb on - strand, within ECD_03871 at 4102.608 kb on + strand, within ECD_03871 at 4102.621 kb on - strand, within ECD_03871 at 4102.664 kb on - strand, within ECD_03871 at 4102.667 kb on + strand, within ECD_03871 at 4102.667 kb on + strand, within ECD_03871 at 4102.668 kb on - strand, within ECD_03871 at 4102.668 kb on - strand, within ECD_03871 at 4102.753 kb on - strand, within ECD_03871 at 4102.813 kb on - strand, within ECD_03871 at 4102.950 kb on + strand, within ECD_03871 at 4102.994 kb on + strand, within ECD_03871 at 4103.165 kb on + strand, within ECD_03871 at 4103.166 kb on - strand, within ECD_03871 at 4103.166 kb on - strand, within ECD_03871 at 4103.221 kb on - strand, within ECD_03871
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,100,678 - +0.1 4,100,678 - +0.2 4,100,682 - -0.1 4,100,741 + ECD_03868 0.26 -0.1 4,100,741 + ECD_03868 0.26 +0.0 4,100,742 - ECD_03868 0.27 +1.0 4,100,826 + ECD_03868 0.69 -0.3 4,100,992 + ECD_03869 0.16 -0.3 4,100,993 - ECD_03869 0.16 -0.6 4,100,993 - ECD_03869 0.16 +0.4 4,101,001 + ECD_03869 0.17 +0.6 4,101,005 - ECD_03869 0.18 +0.1 4,101,005 - ECD_03869 0.18 +0.5 4,101,005 - ECD_03869 0.18 +0.3 4,101,009 + ECD_03869 0.18 +0.8 4,101,010 - ECD_03869 0.18 +0.2 4,101,099 + ECD_03869 0.30 +0.1 4,101,189 + ECD_03869 0.42 +0.7 4,101,223 - ECD_03869 0.46 -0.7 4,101,319 + ECD_03869 0.59 -0.2 4,101,319 + ECD_03869 0.59 +0.8 4,101,319 + ECD_03869 0.59 +1.0 4,101,319 + ECD_03869 0.59 -0.5 4,101,319 + ECD_03869 0.59 +0.8 4,101,319 + ECD_03869 0.59 +0.4 4,101,320 - ECD_03869 0.59 +1.2 4,101,320 - ECD_03869 0.59 -0.2 4,101,320 - ECD_03869 0.59 -0.0 4,101,320 - ECD_03869 0.59 -0.3 4,101,320 - ECD_03869 0.59 +0.3 4,101,491 + ECD_03869 0.82 +1.0 4,101,507 + ECD_03869 0.84 -0.4 4,101,600 + +0.8 4,101,600 + +0.6 4,101,610 - -0.4 4,101,709 + ECD_03870 0.14 -0.0 4,101,881 - ECD_03870 0.41 -0.0 4,101,881 - ECD_03870 0.41 +0.6 4,101,881 - ECD_03870 0.41 -0.1 4,101,882 + ECD_03870 0.41 +0.6 4,101,882 + ECD_03870 0.41 +0.2 4,101,882 + ECD_03870 0.41 -0.2 4,101,882 + ECD_03870 0.41 +0.7 4,101,883 - ECD_03870 0.41 +0.5 4,101,883 - ECD_03870 0.41 +0.6 4,101,883 - ECD_03870 0.41 +0.0 4,101,883 - ECD_03870 0.41 -0.1 4,102,015 - ECD_03870 0.62 -0.5 4,102,072 - ECD_03870 0.71 +0.4 4,102,072 - ECD_03870 0.71 +0.5 4,102,072 - ECD_03870 0.71 -0.1 4,102,142 + ECD_03870 0.82 +0.9 4,102,142 + ECD_03870 0.82 +0.5 4,102,142 + ECD_03870 0.82 -0.5 4,102,143 - ECD_03870 0.82 +0.5 4,102,153 + ECD_03870 0.84 +0.1 4,102,154 - ECD_03870 0.84 +0.5 4,102,157 + ECD_03870 0.84 +0.2 4,102,157 + ECD_03870 0.84 -1.4 4,102,158 - ECD_03870 0.85 +0.6 4,102,158 - ECD_03870 0.85 +0.9 4,102,190 + ECD_03870 0.90 +0.6 4,102,191 - ECD_03870 0.90 -0.4 4,102,191 - ECD_03870 0.90 +0.2 4,102,191 - ECD_03870 0.90 -0.5 4,102,191 - ECD_03870 0.90 +0.7 4,102,229 + +0.0 4,102,251 + -1.5 4,102,251 + +0.4 4,102,251 + +0.5 4,102,252 - -0.0 4,102,252 - +0.3 4,102,315 - +0.5 4,102,335 + -0.5 4,102,457 + ECD_03871 0.11 -0.9 4,102,457 + ECD_03871 0.11 +0.1 4,102,599 + ECD_03871 0.18 -0.4 4,102,599 + ECD_03871 0.18 +0.9 4,102,601 + ECD_03871 0.18 -1.1 4,102,601 + ECD_03871 0.18 +0.7 4,102,601 + ECD_03871 0.18 -0.0 4,102,602 - ECD_03871 0.18 +0.3 4,102,602 - ECD_03871 0.18 +0.4 4,102,602 - ECD_03871 0.18 -0.5 4,102,608 + ECD_03871 0.19 -1.0 4,102,621 - ECD_03871 0.19 -0.8 4,102,664 - ECD_03871 0.22 -0.4 4,102,667 + ECD_03871 0.22 -1.4 4,102,667 + ECD_03871 0.22 +0.2 4,102,668 - ECD_03871 0.22 +0.8 4,102,668 - ECD_03871 0.22 +0.2 4,102,753 - ECD_03871 0.26 +1.0 4,102,813 - ECD_03871 0.29 -0.5 4,102,950 + ECD_03871 0.37 -0.0 4,102,994 + ECD_03871 0.39 -0.2 4,103,165 + ECD_03871 0.48 -0.6 4,103,166 - ECD_03871 0.48 +1.5 4,103,166 - ECD_03871 0.48 +0.5 4,103,221 - ECD_03871 0.51 +0.5
Or see this region's nucleotide sequence