Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03707 and ECD_03708 are separated by 236 nucleotides ECD_03708 and ECD_03709 are separated by 93 nucleotides
ECD_03707: ECD_03707 - methionine biosynthesis regulon transcriptional regulator, at 3,904,730 to 3,905,683
_03707
ECD_03708: ECD_03708 - 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase, at 3,905,920 to 3,908,181
_03708
ECD_03709: ECD_03709 - hypothetical protein, at 3,908,275 to 3,909,171
_03709
Position (kb)
3905
3906
3907
3908
3909 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3905.018 kb on + strand, within ECD_03707 at 3905.018 kb on + strand, within ECD_03707 at 3905.147 kb on - strand, within ECD_03707 at 3905.203 kb on - strand, within ECD_03707 at 3905.245 kb on + strand, within ECD_03707 at 3905.245 kb on + strand, within ECD_03707 at 3905.245 kb on + strand, within ECD_03707 at 3905.245 kb on + strand, within ECD_03707 at 3905.360 kb on + strand, within ECD_03707 at 3905.383 kb on + strand, within ECD_03707 at 3905.389 kb on + strand, within ECD_03707 at 3905.389 kb on + strand, within ECD_03707 at 3905.389 kb on + strand, within ECD_03707 at 3905.389 kb on + strand, within ECD_03707 at 3905.389 kb on + strand, within ECD_03707 at 3905.390 kb on - strand, within ECD_03707 at 3905.390 kb on - strand, within ECD_03707 at 3905.390 kb on - strand, within ECD_03707 at 3905.399 kb on + strand, within ECD_03707 at 3905.400 kb on - strand, within ECD_03707 at 3905.509 kb on + strand, within ECD_03707 at 3905.509 kb on + strand, within ECD_03707 at 3905.541 kb on - strand, within ECD_03707 at 3905.541 kb on - strand, within ECD_03707 at 3905.572 kb on + strand, within ECD_03707 at 3905.573 kb on - strand, within ECD_03707 at 3905.672 kb on + strand at 3905.672 kb on + strand at 3905.673 kb on - strand at 3905.708 kb on + strand at 3905.726 kb on + strand at 3905.727 kb on - strand at 3905.728 kb on + strand at 3905.728 kb on + strand at 3905.728 kb on + strand at 3905.728 kb on + strand at 3905.729 kb on - strand at 3905.729 kb on - strand at 3905.729 kb on - strand at 3905.729 kb on - strand at 3905.793 kb on + strand at 3905.830 kb on + strand at 3905.831 kb on - strand at 3905.831 kb on - strand at 3905.839 kb on - strand at 3905.897 kb on - strand at 3905.900 kb on + strand at 3906.048 kb on - strand at 3906.048 kb on - strand at 3906.118 kb on + strand at 3906.119 kb on - strand at 3906.128 kb on + strand at 3906.128 kb on + strand at 3906.128 kb on + strand at 3906.128 kb on + strand at 3906.128 kb on + strand at 3906.128 kb on + strand at 3906.129 kb on - strand at 3906.129 kb on - strand at 3906.129 kb on - strand at 3906.153 kb on + strand, within ECD_03708 at 3906.191 kb on + strand, within ECD_03708 at 3906.286 kb on + strand, within ECD_03708 at 3906.286 kb on + strand, within ECD_03708 at 3906.287 kb on - strand, within ECD_03708 at 3906.287 kb on - strand, within ECD_03708 at 3906.287 kb on - strand, within ECD_03708 at 3906.287 kb on - strand, within ECD_03708 at 3906.287 kb on - strand, within ECD_03708 at 3906.292 kb on + strand, within ECD_03708 at 3906.292 kb on + strand, within ECD_03708 at 3906.292 kb on + strand, within ECD_03708 at 3906.292 kb on + strand, within ECD_03708 at 3906.293 kb on - strand, within ECD_03708 at 3906.293 kb on - strand, within ECD_03708 at 3906.293 kb on - strand, within ECD_03708 at 3906.293 kb on - strand, within ECD_03708 at 3906.293 kb on - strand, within ECD_03708 at 3906.293 kb on - strand, within ECD_03708 at 3906.293 kb on - strand, within ECD_03708 at 3906.593 kb on - strand, within ECD_03708 at 3906.682 kb on - strand, within ECD_03708 at 3906.719 kb on + strand, within ECD_03708 at 3906.719 kb on + strand, within ECD_03708 at 3906.719 kb on + strand, within ECD_03708 at 3906.719 kb on + strand, within ECD_03708 at 3906.720 kb on - strand, within ECD_03708 at 3906.720 kb on - strand, within ECD_03708 at 3906.720 kb on - strand, within ECD_03708 at 3906.720 kb on - strand, within ECD_03708 at 3906.727 kb on - strand, within ECD_03708 at 3906.832 kb on + strand, within ECD_03708 at 3906.833 kb on - strand, within ECD_03708 at 3906.844 kb on - strand, within ECD_03708 at 3907.071 kb on + strand, within ECD_03708 at 3907.071 kb on + strand, within ECD_03708 at 3907.072 kb on - strand, within ECD_03708 at 3907.079 kb on + strand, within ECD_03708 at 3907.079 kb on + strand, within ECD_03708 at 3907.080 kb on - strand, within ECD_03708 at 3907.080 kb on - strand, within ECD_03708 at 3907.080 kb on - strand, within ECD_03708 at 3907.080 kb on - strand, within ECD_03708 at 3907.084 kb on - strand, within ECD_03708 at 3907.084 kb on - strand, within ECD_03708 at 3907.094 kb on + strand, within ECD_03708 at 3907.147 kb on + strand, within ECD_03708 at 3907.288 kb on + strand, within ECD_03708 at 3907.288 kb on + strand, within ECD_03708 at 3907.289 kb on - strand, within ECD_03708 at 3907.312 kb on - strand, within ECD_03708 at 3907.312 kb on - strand, within ECD_03708 at 3907.312 kb on - strand, within ECD_03708 at 3907.361 kb on + strand, within ECD_03708 at 3907.361 kb on + strand, within ECD_03708 at 3907.361 kb on + strand, within ECD_03708 at 3907.361 kb on + strand, within ECD_03708 at 3907.362 kb on - strand, within ECD_03708 at 3907.362 kb on - strand, within ECD_03708 at 3907.397 kb on - strand, within ECD_03708 at 3907.453 kb on + strand, within ECD_03708 at 3907.453 kb on + strand, within ECD_03708 at 3907.453 kb on + strand, within ECD_03708 at 3907.454 kb on - strand, within ECD_03708 at 3907.535 kb on - strand, within ECD_03708 at 3907.554 kb on + strand, within ECD_03708 at 3907.592 kb on + strand, within ECD_03708 at 3907.768 kb on + strand, within ECD_03708 at 3907.769 kb on - strand, within ECD_03708 at 3907.785 kb on - strand, within ECD_03708 at 3908.186 kb on + strand at 3908.186 kb on + strand at 3908.202 kb on + strand at 3908.217 kb on + strand at 3908.217 kb on + strand at 3908.217 kb on + strand at 3908.248 kb on + strand at 3908.248 kb on + strand at 3908.252 kb on + strand at 3908.252 kb on + strand at 3908.252 kb on + strand at 3908.252 kb on + strand at 3908.252 kb on + strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.253 kb on - strand at 3908.262 kb on - strand at 3908.290 kb on + strand at 3908.309 kb on + strand at 3908.310 kb on - strand at 3908.310 kb on - strand at 3908.314 kb on + strand at 3908.341 kb on - strand at 3908.365 kb on + strand, within ECD_03709 at 3908.383 kb on - strand, within ECD_03709 at 3908.383 kb on - strand, within ECD_03709 at 3908.403 kb on + strand, within ECD_03709 at 3908.403 kb on + strand, within ECD_03709 at 3908.412 kb on + strand, within ECD_03709 at 3908.412 kb on + strand, within ECD_03709 at 3908.413 kb on - strand, within ECD_03709 at 3908.452 kb on - strand, within ECD_03709 at 3908.452 kb on - strand, within ECD_03709 at 3908.454 kb on - strand, within ECD_03709 at 3908.476 kb on + strand, within ECD_03709 at 3908.476 kb on + strand, within ECD_03709 at 3908.476 kb on + strand, within ECD_03709 at 3908.476 kb on + strand, within ECD_03709 at 3908.477 kb on - strand, within ECD_03709 at 3908.477 kb on - strand, within ECD_03709 at 3908.479 kb on + strand, within ECD_03709 at 3908.560 kb on - strand, within ECD_03709 at 3908.560 kb on - strand, within ECD_03709 at 3908.732 kb on + strand, within ECD_03709 at 3908.733 kb on - strand, within ECD_03709 at 3908.733 kb on - strand, within ECD_03709 at 3908.756 kb on + strand, within ECD_03709 at 3908.757 kb on - strand, within ECD_03709 at 3908.780 kb on + strand, within ECD_03709 at 3908.780 kb on + strand, within ECD_03709 at 3908.780 kb on + strand, within ECD_03709 at 3908.781 kb on - strand, within ECD_03709 at 3908.781 kb on - strand, within ECD_03709 at 3908.781 kb on - strand, within ECD_03709 at 3908.781 kb on - strand, within ECD_03709 at 3908.781 kb on - strand, within ECD_03709 at 3908.782 kb on + strand, within ECD_03709 at 3908.782 kb on + strand, within ECD_03709 at 3908.783 kb on - strand, within ECD_03709 at 3908.783 kb on - strand, within ECD_03709 at 3908.794 kb on + strand, within ECD_03709 at 3908.866 kb on - strand, within ECD_03709 at 3908.869 kb on - strand, within ECD_03709 at 3908.901 kb on + strand, within ECD_03709 at 3908.964 kb on + strand, within ECD_03709 at 3908.978 kb on + strand, within ECD_03709 at 3908.978 kb on + strand, within ECD_03709 at 3908.978 kb on + strand, within ECD_03709 at 3908.979 kb on - strand, within ECD_03709 at 3908.979 kb on - strand, within ECD_03709 at 3908.979 kb on - strand, within ECD_03709 at 3908.979 kb on - strand, within ECD_03709 at 3909.004 kb on - strand, within ECD_03709 at 3909.004 kb on - strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.005 kb on + strand, within ECD_03709 at 3909.006 kb on - strand, within ECD_03709 at 3909.006 kb on - strand, within ECD_03709 at 3909.065 kb on + strand, within ECD_03709 at 3909.066 kb on - strand, within ECD_03709 at 3909.066 kb on - strand, within ECD_03709 at 3909.087 kb on + strand at 3909.088 kb on - strand at 3909.088 kb on - strand at 3909.088 kb on - strand at 3909.091 kb on + strand at 3909.092 kb on - strand at 3909.111 kb on + strand at 3909.111 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.171 kb on + strand at 3909.172 kb on - strand at 3909.172 kb on - strand at 3909.172 kb on - strand at 3909.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,905,018 + ECD_03707 0.30 -0.9 3,905,018 + ECD_03707 0.30 -0.3 3,905,147 - ECD_03707 0.44 -1.0 3,905,203 - ECD_03707 0.50 +0.0 3,905,245 + ECD_03707 0.54 -0.3 3,905,245 + ECD_03707 0.54 -0.0 3,905,245 + ECD_03707 0.54 -1.4 3,905,245 + ECD_03707 0.54 +0.0 3,905,360 + ECD_03707 0.66 -0.6 3,905,383 + ECD_03707 0.68 +1.3 3,905,389 + ECD_03707 0.69 -0.8 3,905,389 + ECD_03707 0.69 -0.7 3,905,389 + ECD_03707 0.69 +0.3 3,905,389 + ECD_03707 0.69 -0.6 3,905,389 + ECD_03707 0.69 +0.9 3,905,390 - ECD_03707 0.69 +0.3 3,905,390 - ECD_03707 0.69 +1.1 3,905,390 - ECD_03707 0.69 -0.1 3,905,399 + ECD_03707 0.70 -0.2 3,905,400 - ECD_03707 0.70 -0.6 3,905,509 + ECD_03707 0.82 +0.4 3,905,509 + ECD_03707 0.82 +0.7 3,905,541 - ECD_03707 0.85 +0.1 3,905,541 - ECD_03707 0.85 +0.0 3,905,572 + ECD_03707 0.88 +0.7 3,905,573 - ECD_03707 0.88 +0.3 3,905,672 + +0.3 3,905,672 + +0.0 3,905,673 - -1.0 3,905,708 + -0.9 3,905,726 + -0.3 3,905,727 - -0.2 3,905,728 + -0.1 3,905,728 + +0.4 3,905,728 + -0.3 3,905,728 + -1.2 3,905,729 - -0.5 3,905,729 - +0.3 3,905,729 - -0.9 3,905,729 - -0.1 3,905,793 + +0.5 3,905,830 + -0.9 3,905,831 - +0.5 3,905,831 - -0.2 3,905,839 - +0.4 3,905,897 - +0.3 3,905,900 + +0.9 3,906,048 - -0.5 3,906,048 - +0.8 3,906,118 + +0.4 3,906,119 - +0.6 3,906,128 + +1.9 3,906,128 + +0.0 3,906,128 + -0.0 3,906,128 + -0.8 3,906,128 + -0.1 3,906,128 + -0.2 3,906,129 - -1.1 3,906,129 - +0.1 3,906,129 - -0.8 3,906,153 + ECD_03708 0.10 +0.9 3,906,191 + ECD_03708 0.12 -0.4 3,906,286 + ECD_03708 0.16 -0.3 3,906,286 + ECD_03708 0.16 -0.9 3,906,287 - ECD_03708 0.16 +0.5 3,906,287 - ECD_03708 0.16 +0.2 3,906,287 - ECD_03708 0.16 +0.2 3,906,287 - ECD_03708 0.16 -0.4 3,906,287 - ECD_03708 0.16 -0.1 3,906,292 + ECD_03708 0.16 +0.1 3,906,292 + ECD_03708 0.16 -0.8 3,906,292 + ECD_03708 0.16 +0.2 3,906,292 + ECD_03708 0.16 -0.4 3,906,293 - ECD_03708 0.16 -0.7 3,906,293 - ECD_03708 0.16 +0.2 3,906,293 - ECD_03708 0.16 -0.2 3,906,293 - ECD_03708 0.16 -0.5 3,906,293 - ECD_03708 0.16 +0.9 3,906,293 - ECD_03708 0.16 -0.1 3,906,293 - ECD_03708 0.16 -0.2 3,906,593 - ECD_03708 0.30 +0.1 3,906,682 - ECD_03708 0.34 -0.5 3,906,719 + ECD_03708 0.35 -3.4 3,906,719 + ECD_03708 0.35 -0.1 3,906,719 + ECD_03708 0.35 +0.3 3,906,719 + ECD_03708 0.35 -0.2 3,906,720 - ECD_03708 0.35 +0.6 3,906,720 - ECD_03708 0.35 +0.2 3,906,720 - ECD_03708 0.35 +0.3 3,906,720 - ECD_03708 0.35 -0.6 3,906,727 - ECD_03708 0.36 +0.4 3,906,832 + ECD_03708 0.40 -0.2 3,906,833 - ECD_03708 0.40 +0.3 3,906,844 - ECD_03708 0.41 -0.1 3,907,071 + ECD_03708 0.51 -0.6 3,907,071 + ECD_03708 0.51 -2.1 3,907,072 - ECD_03708 0.51 +0.0 3,907,079 + ECD_03708 0.51 +0.7 3,907,079 + ECD_03708 0.51 +1.4 3,907,080 - ECD_03708 0.51 +0.5 3,907,080 - ECD_03708 0.51 -0.5 3,907,080 - ECD_03708 0.51 -1.1 3,907,080 - ECD_03708 0.51 +0.2 3,907,084 - ECD_03708 0.51 -0.1 3,907,084 - ECD_03708 0.51 +1.2 3,907,094 + ECD_03708 0.52 -0.5 3,907,147 + ECD_03708 0.54 +0.5 3,907,288 + ECD_03708 0.60 -0.3 3,907,288 + ECD_03708 0.60 +0.4 3,907,289 - ECD_03708 0.61 +0.3 3,907,312 - ECD_03708 0.62 -1.7 3,907,312 - ECD_03708 0.62 -0.2 3,907,312 - ECD_03708 0.62 -0.4 3,907,361 + ECD_03708 0.64 +0.2 3,907,361 + ECD_03708 0.64 +1.1 3,907,361 + ECD_03708 0.64 +0.5 3,907,361 + ECD_03708 0.64 +0.4 3,907,362 - ECD_03708 0.64 -0.8 3,907,362 - ECD_03708 0.64 -0.2 3,907,397 - ECD_03708 0.65 +0.0 3,907,453 + ECD_03708 0.68 +0.4 3,907,453 + ECD_03708 0.68 +0.1 3,907,453 + ECD_03708 0.68 -0.3 3,907,454 - ECD_03708 0.68 +0.5 3,907,535 - ECD_03708 0.71 -0.1 3,907,554 + ECD_03708 0.72 -0.6 3,907,592 + ECD_03708 0.74 +0.9 3,907,768 + ECD_03708 0.82 -0.8 3,907,769 - ECD_03708 0.82 +1.7 3,907,785 - ECD_03708 0.82 -0.4 3,908,186 + +0.0 3,908,186 + -0.2 3,908,202 + -1.3 3,908,217 + -1.5 3,908,217 + -0.0 3,908,217 + +0.4 3,908,248 + -0.3 3,908,248 + +0.0 3,908,252 + -0.4 3,908,252 + +0.0 3,908,252 + +0.1 3,908,252 + -0.5 3,908,252 + +0.1 3,908,253 - +0.2 3,908,253 - -0.3 3,908,253 - -0.3 3,908,253 - +0.2 3,908,253 - -0.3 3,908,253 - -1.2 3,908,253 - -2.1 3,908,253 - -0.1 3,908,253 - -0.2 3,908,253 - -0.9 3,908,253 - -0.3 3,908,253 - +0.3 3,908,262 - +0.1 3,908,290 + +0.2 3,908,309 + +0.1 3,908,310 - -1.8 3,908,310 - -0.6 3,908,314 + -0.1 3,908,341 - -0.5 3,908,365 + ECD_03709 0.10 +0.3 3,908,383 - ECD_03709 0.12 +0.5 3,908,383 - ECD_03709 0.12 -0.2 3,908,403 + ECD_03709 0.14 -0.0 3,908,403 + ECD_03709 0.14 -0.3 3,908,412 + ECD_03709 0.15 -1.5 3,908,412 + ECD_03709 0.15 -0.4 3,908,413 - ECD_03709 0.15 +0.2 3,908,452 - ECD_03709 0.20 +0.2 3,908,452 - ECD_03709 0.20 +0.2 3,908,454 - ECD_03709 0.20 +0.3 3,908,476 + ECD_03709 0.22 -0.5 3,908,476 + ECD_03709 0.22 -0.2 3,908,476 + ECD_03709 0.22 -0.1 3,908,476 + ECD_03709 0.22 -0.4 3,908,477 - ECD_03709 0.23 +2.4 3,908,477 - ECD_03709 0.23 +0.2 3,908,479 + ECD_03709 0.23 +0.3 3,908,560 - ECD_03709 0.32 +0.2 3,908,560 - ECD_03709 0.32 -0.9 3,908,732 + ECD_03709 0.51 +0.5 3,908,733 - ECD_03709 0.51 -0.1 3,908,733 - ECD_03709 0.51 -0.3 3,908,756 + ECD_03709 0.54 +0.1 3,908,757 - ECD_03709 0.54 +0.8 3,908,780 + ECD_03709 0.56 -0.1 3,908,780 + ECD_03709 0.56 +0.2 3,908,780 + ECD_03709 0.56 +1.2 3,908,781 - ECD_03709 0.56 +0.3 3,908,781 - ECD_03709 0.56 +0.0 3,908,781 - ECD_03709 0.56 -0.3 3,908,781 - ECD_03709 0.56 +1.7 3,908,781 - ECD_03709 0.56 -0.2 3,908,782 + ECD_03709 0.57 -0.5 3,908,782 + ECD_03709 0.57 +0.5 3,908,783 - ECD_03709 0.57 -0.3 3,908,783 - ECD_03709 0.57 -0.8 3,908,794 + ECD_03709 0.58 +0.3 3,908,866 - ECD_03709 0.66 -0.5 3,908,869 - ECD_03709 0.66 +0.3 3,908,901 + ECD_03709 0.70 -0.1 3,908,964 + ECD_03709 0.77 +0.5 3,908,978 + ECD_03709 0.78 -0.8 3,908,978 + ECD_03709 0.78 -0.3 3,908,978 + ECD_03709 0.78 -0.0 3,908,979 - ECD_03709 0.78 -1.0 3,908,979 - ECD_03709 0.78 -0.1 3,908,979 - ECD_03709 0.78 +0.2 3,908,979 - ECD_03709 0.78 +0.5 3,909,004 - ECD_03709 0.81 -0.1 3,909,004 - ECD_03709 0.81 +0.6 3,909,005 + ECD_03709 0.81 -0.6 3,909,005 + ECD_03709 0.81 -0.7 3,909,005 + ECD_03709 0.81 -0.2 3,909,005 + ECD_03709 0.81 +0.2 3,909,005 + ECD_03709 0.81 -0.2 3,909,005 + ECD_03709 0.81 +1.0 3,909,006 - ECD_03709 0.81 -0.4 3,909,006 - ECD_03709 0.81 +0.2 3,909,065 + ECD_03709 0.88 +0.5 3,909,066 - ECD_03709 0.88 +0.8 3,909,066 - ECD_03709 0.88 +0.4 3,909,087 + +0.1 3,909,088 - +0.9 3,909,088 - -0.2 3,909,088 - +0.3 3,909,091 + -0.8 3,909,092 - +0.2 3,909,111 + -0.2 3,909,111 + +0.1 3,909,171 + -0.5 3,909,171 + +1.4 3,909,171 + -0.1 3,909,171 + -0.7 3,909,171 + -0.3 3,909,171 + -0.4 3,909,171 + -0.1 3,909,172 - +0.6 3,909,172 - -0.4 3,909,172 - +0.7 3,909,172 - +0.3
Or see this region's nucleotide sequence