Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03698 and ECD_03699 are separated by 51 nucleotides ECD_03699 and ECD_03700 are separated by 164 nucleotides ECD_03700 and ECD_03701 are separated by 118 nucleotides
ECD_03698: ECD_03698 - putative chloramphenical resistance permease, at 3,896,163 to 3,897,053
_03698
ECD_03699: ECD_03699 - 4HBT thioesterase family protein, at 3,897,105 to 3,897,572
_03699
ECD_03700: ECD_03700 - outer membrane phospholipase A, at 3,897,737 to 3,898,606
_03700
ECD_03701: ECD_03701 - ATP-dependent DNA helicase, at 3,898,725 to 3,900,560
_03701
Position (kb)
3897
3898
3899 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3896.737 kb on + strand, within ECD_03698 at 3896.759 kb on + strand, within ECD_03698 at 3896.959 kb on + strand, within ECD_03698 at 3896.959 kb on + strand, within ECD_03698 at 3896.962 kb on + strand, within ECD_03698 at 3896.963 kb on - strand, within ECD_03698 at 3896.977 kb on + strand at 3896.977 kb on + strand at 3896.977 kb on + strand at 3896.978 kb on - strand at 3896.978 kb on - strand at 3896.988 kb on + strand at 3897.005 kb on - strand at 3897.025 kb on - strand at 3897.111 kb on + strand at 3897.111 kb on + strand at 3897.111 kb on + strand at 3897.112 kb on - strand at 3897.112 kb on - strand at 3897.112 kb on - strand at 3897.112 kb on - strand at 3897.112 kb on - strand at 3897.112 kb on - strand at 3897.116 kb on + strand at 3897.117 kb on - strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.140 kb on + strand at 3897.142 kb on + strand at 3897.142 kb on + strand at 3897.142 kb on + strand at 3897.143 kb on - strand at 3897.143 kb on - strand at 3897.143 kb on - strand at 3897.143 kb on - strand at 3897.221 kb on + strand, within ECD_03699 at 3897.298 kb on - strand, within ECD_03699 at 3897.298 kb on - strand, within ECD_03699 at 3897.298 kb on - strand, within ECD_03699 at 3897.335 kb on + strand, within ECD_03699 at 3897.335 kb on + strand, within ECD_03699 at 3897.335 kb on + strand, within ECD_03699 at 3897.336 kb on - strand, within ECD_03699 at 3897.534 kb on + strand at 3897.572 kb on + strand at 3897.573 kb on - strand at 3897.573 kb on - strand at 3897.573 kb on - strand at 3897.573 kb on - strand at 3897.581 kb on + strand at 3897.581 kb on + strand at 3897.581 kb on + strand at 3897.582 kb on - strand at 3897.582 kb on - strand at 3897.582 kb on - strand at 3897.582 kb on - strand at 3897.635 kb on + strand at 3897.636 kb on - strand at 3897.650 kb on + strand at 3897.669 kb on + strand at 3897.670 kb on - strand at 3897.670 kb on - strand at 3897.670 kb on - strand at 3897.673 kb on + strand at 3897.674 kb on - strand at 3897.674 kb on - strand at 3897.674 kb on - strand at 3897.772 kb on + strand at 3897.773 kb on - strand at 3897.773 kb on - strand at 3897.789 kb on + strand at 3897.789 kb on + strand at 3897.789 kb on + strand at 3897.790 kb on - strand at 3897.790 kb on - strand at 3897.790 kb on - strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.792 kb on - strand at 3897.792 kb on - strand at 3897.792 kb on - strand at 3897.847 kb on + strand, within ECD_03700 at 3897.848 kb on - strand, within ECD_03700 at 3897.848 kb on - strand, within ECD_03700 at 3897.859 kb on + strand, within ECD_03700 at 3897.859 kb on + strand, within ECD_03700 at 3897.860 kb on - strand, within ECD_03700 at 3897.860 kb on - strand, within ECD_03700 at 3897.894 kb on - strand, within ECD_03700 at 3897.899 kb on + strand, within ECD_03700 at 3897.899 kb on + strand, within ECD_03700 at 3897.911 kb on + strand, within ECD_03700 at 3897.911 kb on + strand, within ECD_03700 at 3897.911 kb on + strand, within ECD_03700 at 3897.911 kb on + strand, within ECD_03700 at 3897.911 kb on + strand, within ECD_03700 at 3897.912 kb on - strand, within ECD_03700 at 3897.912 kb on - strand, within ECD_03700 at 3897.912 kb on - strand, within ECD_03700 at 3897.920 kb on + strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3898.042 kb on - strand, within ECD_03700 at 3898.072 kb on + strand, within ECD_03700 at 3898.099 kb on + strand, within ECD_03700 at 3898.100 kb on - strand, within ECD_03700 at 3898.102 kb on + strand, within ECD_03700 at 3898.102 kb on + strand, within ECD_03700 at 3898.136 kb on + strand, within ECD_03700 at 3898.136 kb on + strand, within ECD_03700 at 3898.137 kb on - strand, within ECD_03700 at 3898.172 kb on + strand, within ECD_03700 at 3898.271 kb on + strand, within ECD_03700 at 3898.272 kb on - strand, within ECD_03700 at 3898.272 kb on - strand, within ECD_03700 at 3898.325 kb on + strand, within ECD_03700 at 3898.326 kb on - strand, within ECD_03700 at 3898.326 kb on - strand, within ECD_03700 at 3898.326 kb on - strand, within ECD_03700 at 3898.326 kb on - strand, within ECD_03700 at 3898.326 kb on - strand, within ECD_03700 at 3898.326 kb on - strand, within ECD_03700 at 3898.367 kb on + strand, within ECD_03700 at 3898.367 kb on + strand, within ECD_03700 at 3898.367 kb on + strand, within ECD_03700 at 3898.367 kb on + strand, within ECD_03700 at 3898.367 kb on + strand, within ECD_03700 at 3898.367 kb on + strand, within ECD_03700 at 3898.367 kb on + strand, within ECD_03700 at 3898.368 kb on - strand, within ECD_03700 at 3898.368 kb on - strand, within ECD_03700 at 3898.368 kb on - strand, within ECD_03700 at 3898.368 kb on - strand, within ECD_03700 at 3898.368 kb on - strand, within ECD_03700 at 3898.376 kb on + strand, within ECD_03700 at 3898.377 kb on - strand, within ECD_03700 at 3898.398 kb on - strand, within ECD_03700 at 3898.437 kb on - strand, within ECD_03700 at 3898.471 kb on - strand, within ECD_03700 at 3898.476 kb on + strand, within ECD_03700 at 3898.476 kb on + strand, within ECD_03700 at 3898.476 kb on + strand, within ECD_03700 at 3898.476 kb on + strand, within ECD_03700 at 3898.476 kb on + strand, within ECD_03700 at 3898.477 kb on - strand, within ECD_03700 at 3898.477 kb on - strand, within ECD_03700 at 3898.477 kb on - strand, within ECD_03700 at 3898.508 kb on + strand, within ECD_03700 at 3898.509 kb on - strand, within ECD_03700 at 3898.510 kb on + strand, within ECD_03700 at 3898.550 kb on + strand at 3898.550 kb on + strand at 3898.552 kb on + strand at 3898.552 kb on + strand at 3898.553 kb on - strand at 3898.553 kb on - strand at 3898.553 kb on - strand at 3898.585 kb on + strand at 3898.586 kb on - strand at 3898.586 kb on - strand at 3898.586 kb on - strand at 3898.586 kb on - strand at 3898.586 kb on - strand at 3898.586 kb on - strand at 3898.586 kb on - strand at 3898.695 kb on + strand at 3899.051 kb on + strand, within ECD_03701 at 3899.088 kb on + strand, within ECD_03701 at 3899.089 kb on - strand, within ECD_03701 at 3899.089 kb on - strand, within ECD_03701 at 3899.089 kb on - strand, within ECD_03701 at 3899.117 kb on + strand, within ECD_03701 at 3899.180 kb on + strand, within ECD_03701 at 3899.180 kb on + strand, within ECD_03701 at 3899.180 kb on + strand, within ECD_03701 at 3899.180 kb on + strand, within ECD_03701 at 3899.181 kb on - strand, within ECD_03701 at 3899.181 kb on - strand, within ECD_03701 at 3899.181 kb on - strand, within ECD_03701 at 3899.181 kb on - strand, within ECD_03701 at 3899.373 kb on + strand, within ECD_03701 at 3899.374 kb on - strand, within ECD_03701 at 3899.439 kb on - strand, within ECD_03701 at 3899.451 kb on - strand, within ECD_03701 at 3899.451 kb on - strand, within ECD_03701 at 3899.451 kb on - strand, within ECD_03701 at 3899.451 kb on - strand, within ECD_03701 at 3899.451 kb on - strand, within ECD_03701 at 3899.454 kb on + strand, within ECD_03701 at 3899.476 kb on + strand, within ECD_03701 at 3899.526 kb on + strand, within ECD_03701 at 3899.546 kb on + strand, within ECD_03701 at 3899.546 kb on + strand, within ECD_03701
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,896,737 + ECD_03698 0.64 -0.4 3,896,759 + ECD_03698 0.67 +0.9 3,896,959 + ECD_03698 0.89 -0.1 3,896,959 + ECD_03698 0.89 +0.1 3,896,962 + ECD_03698 0.90 +0.2 3,896,963 - ECD_03698 0.90 -0.3 3,896,977 + -0.1 3,896,977 + +0.6 3,896,977 + -0.0 3,896,978 - -0.6 3,896,978 - +0.8 3,896,988 + +0.3 3,897,005 - +0.0 3,897,025 - -0.5 3,897,111 + +0.1 3,897,111 + -0.3 3,897,111 + -0.2 3,897,112 - +0.1 3,897,112 - -1.0 3,897,112 - -0.0 3,897,112 - -0.7 3,897,112 - +0.1 3,897,112 - +0.4 3,897,116 + +0.2 3,897,117 - -0.2 3,897,118 + +0.4 3,897,118 + -1.7 3,897,118 + +0.4 3,897,118 + +0.1 3,897,118 + -0.3 3,897,118 + +0.2 3,897,118 + +0.2 3,897,118 + -0.0 3,897,119 - -0.2 3,897,119 - -1.0 3,897,119 - +0.0 3,897,119 - -0.2 3,897,119 - -0.0 3,897,119 - -0.2 3,897,119 - +0.1 3,897,140 + +0.2 3,897,142 + +0.6 3,897,142 + -0.0 3,897,142 + -0.1 3,897,143 - +0.5 3,897,143 - -0.4 3,897,143 - -0.5 3,897,143 - +0.4 3,897,221 + ECD_03699 0.25 +0.1 3,897,298 - ECD_03699 0.41 +0.1 3,897,298 - ECD_03699 0.41 -0.5 3,897,298 - ECD_03699 0.41 +0.2 3,897,335 + ECD_03699 0.49 -0.9 3,897,335 + ECD_03699 0.49 +1.2 3,897,335 + ECD_03699 0.49 +0.5 3,897,336 - ECD_03699 0.49 -0.1 3,897,534 + +0.3 3,897,572 + -0.5 3,897,573 - +0.4 3,897,573 - -0.9 3,897,573 - +0.2 3,897,573 - +0.7 3,897,581 + -0.3 3,897,581 + +0.6 3,897,581 + -0.3 3,897,582 - +0.2 3,897,582 - -0.6 3,897,582 - -0.0 3,897,582 - +0.1 3,897,635 + +0.2 3,897,636 - -1.3 3,897,650 + +0.0 3,897,669 + -0.1 3,897,670 - +0.3 3,897,670 - -0.4 3,897,670 - +0.4 3,897,673 + +0.3 3,897,674 - +0.4 3,897,674 - -1.8 3,897,674 - -0.5 3,897,772 + -1.1 3,897,773 - +0.6 3,897,773 - +0.4 3,897,789 + -0.4 3,897,789 + +0.3 3,897,789 + -0.5 3,897,790 - -0.4 3,897,790 - +0.0 3,897,790 - +0.3 3,897,791 + +0.2 3,897,791 + +0.2 3,897,791 + +1.5 3,897,791 + +0.2 3,897,791 + +0.4 3,897,791 + +0.4 3,897,791 + +0.5 3,897,792 - -0.0 3,897,792 - -0.1 3,897,792 - -0.2 3,897,847 + ECD_03700 0.13 -1.2 3,897,848 - ECD_03700 0.13 +0.0 3,897,848 - ECD_03700 0.13 +1.1 3,897,859 + ECD_03700 0.14 -0.9 3,897,859 + ECD_03700 0.14 -0.3 3,897,860 - ECD_03700 0.14 +1.0 3,897,860 - ECD_03700 0.14 -0.7 3,897,894 - ECD_03700 0.18 -0.8 3,897,899 + ECD_03700 0.19 -0.5 3,897,899 + ECD_03700 0.19 -0.2 3,897,911 + ECD_03700 0.20 -0.8 3,897,911 + ECD_03700 0.20 -0.2 3,897,911 + ECD_03700 0.20 +2.3 3,897,911 + ECD_03700 0.20 +0.3 3,897,911 + ECD_03700 0.20 +0.9 3,897,912 - ECD_03700 0.20 -0.0 3,897,912 - ECD_03700 0.20 -0.5 3,897,912 - ECD_03700 0.20 +0.3 3,897,920 + ECD_03700 0.21 +0.4 3,897,921 - ECD_03700 0.21 -0.1 3,897,921 - ECD_03700 0.21 -0.4 3,897,921 - ECD_03700 0.21 +0.3 3,897,921 - ECD_03700 0.21 -0.3 3,897,921 - ECD_03700 0.21 +0.3 3,897,921 - ECD_03700 0.21 +0.3 3,898,042 - ECD_03700 0.35 -0.5 3,898,072 + ECD_03700 0.39 +0.2 3,898,099 + ECD_03700 0.42 +0.1 3,898,100 - ECD_03700 0.42 +0.0 3,898,102 + ECD_03700 0.42 +0.1 3,898,102 + ECD_03700 0.42 +0.6 3,898,136 + ECD_03700 0.46 -0.5 3,898,136 + ECD_03700 0.46 -0.1 3,898,137 - ECD_03700 0.46 +1.3 3,898,172 + ECD_03700 0.50 +0.1 3,898,271 + ECD_03700 0.61 +0.4 3,898,272 - ECD_03700 0.61 +0.1 3,898,272 - ECD_03700 0.61 -2.2 3,898,325 + ECD_03700 0.68 +0.1 3,898,326 - ECD_03700 0.68 -0.7 3,898,326 - ECD_03700 0.68 -1.8 3,898,326 - ECD_03700 0.68 +0.0 3,898,326 - ECD_03700 0.68 -0.6 3,898,326 - ECD_03700 0.68 -1.3 3,898,326 - ECD_03700 0.68 +0.3 3,898,367 + ECD_03700 0.72 -0.5 3,898,367 + ECD_03700 0.72 -0.8 3,898,367 + ECD_03700 0.72 +0.2 3,898,367 + ECD_03700 0.72 -2.3 3,898,367 + ECD_03700 0.72 -1.3 3,898,367 + ECD_03700 0.72 -0.4 3,898,367 + ECD_03700 0.72 -0.3 3,898,368 - ECD_03700 0.73 +1.0 3,898,368 - ECD_03700 0.73 +0.1 3,898,368 - ECD_03700 0.73 -0.2 3,898,368 - ECD_03700 0.73 -0.4 3,898,368 - ECD_03700 0.73 +0.3 3,898,376 + ECD_03700 0.73 -0.4 3,898,377 - ECD_03700 0.74 -0.1 3,898,398 - ECD_03700 0.76 -0.2 3,898,437 - ECD_03700 0.80 +0.7 3,898,471 - ECD_03700 0.84 -0.1 3,898,476 + ECD_03700 0.85 -0.3 3,898,476 + ECD_03700 0.85 +0.5 3,898,476 + ECD_03700 0.85 -0.9 3,898,476 + ECD_03700 0.85 +0.0 3,898,476 + ECD_03700 0.85 +0.0 3,898,477 - ECD_03700 0.85 +0.7 3,898,477 - ECD_03700 0.85 -0.7 3,898,477 - ECD_03700 0.85 -0.8 3,898,508 + ECD_03700 0.89 -1.5 3,898,509 - ECD_03700 0.89 +0.3 3,898,510 + ECD_03700 0.89 +1.0 3,898,550 + +0.5 3,898,550 + +0.9 3,898,552 + +0.8 3,898,552 + -0.2 3,898,553 - -0.7 3,898,553 - -0.1 3,898,553 - -0.1 3,898,585 + -0.5 3,898,586 - -0.4 3,898,586 - +0.2 3,898,586 - -0.7 3,898,586 - -0.4 3,898,586 - +0.7 3,898,586 - -0.1 3,898,586 - +0.1 3,898,695 + +0.4 3,899,051 + ECD_03701 0.18 +0.2 3,899,088 + ECD_03701 0.20 +0.7 3,899,089 - ECD_03701 0.20 +0.3 3,899,089 - ECD_03701 0.20 +0.1 3,899,089 - ECD_03701 0.20 +0.2 3,899,117 + ECD_03701 0.21 -0.8 3,899,180 + ECD_03701 0.25 +0.4 3,899,180 + ECD_03701 0.25 -0.6 3,899,180 + ECD_03701 0.25 -0.2 3,899,180 + ECD_03701 0.25 +0.1 3,899,181 - ECD_03701 0.25 -0.5 3,899,181 - ECD_03701 0.25 -0.1 3,899,181 - ECD_03701 0.25 -1.0 3,899,181 - ECD_03701 0.25 +0.4 3,899,373 + ECD_03701 0.35 -0.1 3,899,374 - ECD_03701 0.35 -0.2 3,899,439 - ECD_03701 0.39 +0.2 3,899,451 - ECD_03701 0.40 -0.1 3,899,451 - ECD_03701 0.40 -0.1 3,899,451 - ECD_03701 0.40 -0.2 3,899,451 - ECD_03701 0.40 +0.2 3,899,451 - ECD_03701 0.40 -0.0 3,899,454 + ECD_03701 0.40 +0.1 3,899,476 + ECD_03701 0.41 +1.3 3,899,526 + ECD_03701 0.44 -0.7 3,899,546 + ECD_03701 0.45 -0.6 3,899,546 + ECD_03701 0.45 +0.7
Or see this region's nucleotide sequence