Strain Fitness in Escherichia coli BL21 around ECD_03564

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03563 and ECD_03564 are separated by 166 nucleotidesECD_03564 and ECD_03565 overlap by 4 nucleotides ECD_03563: ECD_03563 - putative transporter, at 3,746,768 to 3,748,483 _03563 ECD_03564: ECD_03564 - AraC family putative transcriptional regulator, at 3,748,650 to 3,749,543 _03564 ECD_03565: ECD_03565 - putative 6-phospho-beta-glucosidase, at 3,749,540 to 3,750,862 _03565 Position (kb) 3748 3749 3750Strain fitness (log2 ratio) -2 -1 0 1 2at 3747.704 kb on - strand, within ECD_03563at 3747.711 kb on + strand, within ECD_03563at 3747.711 kb on + strand, within ECD_03563at 3747.712 kb on - strand, within ECD_03563at 3747.833 kb on - strand, within ECD_03563at 3747.984 kb on - strand, within ECD_03563at 3748.106 kb on + strand, within ECD_03563at 3748.107 kb on - strand, within ECD_03563at 3748.126 kb on + strand, within ECD_03563at 3748.127 kb on - strand, within ECD_03563at 3748.127 kb on - strand, within ECD_03563at 3748.127 kb on - strand, within ECD_03563at 3748.129 kb on + strand, within ECD_03563at 3748.130 kb on - strand, within ECD_03563at 3748.211 kb on + strand, within ECD_03563at 3748.279 kb on - strand, within ECD_03563at 3748.332 kb on - strandat 3748.380 kb on + strandat 3748.489 kb on - strandat 3748.499 kb on + strandat 3748.500 kb on - strandat 3748.527 kb on - strandat 3748.537 kb on - strandat 3748.701 kb on - strandat 3748.764 kb on - strand, within ECD_03564at 3748.767 kb on + strand, within ECD_03564at 3748.767 kb on + strand, within ECD_03564at 3748.767 kb on + strand, within ECD_03564at 3748.767 kb on + strand, within ECD_03564at 3748.767 kb on + strand, within ECD_03564at 3748.845 kb on + strand, within ECD_03564at 3748.846 kb on - strand, within ECD_03564at 3748.847 kb on + strand, within ECD_03564at 3748.847 kb on + strand, within ECD_03564at 3748.847 kb on + strand, within ECD_03564at 3748.853 kb on - strand, within ECD_03564at 3748.913 kb on + strand, within ECD_03564at 3748.947 kb on + strand, within ECD_03564at 3749.040 kb on + strand, within ECD_03564at 3749.042 kb on + strand, within ECD_03564at 3749.169 kb on + strand, within ECD_03564at 3749.169 kb on + strand, within ECD_03564at 3749.227 kb on + strand, within ECD_03564at 3749.264 kb on + strand, within ECD_03564at 3749.285 kb on + strand, within ECD_03564at 3749.343 kb on + strand, within ECD_03564at 3749.344 kb on - strand, within ECD_03564at 3749.346 kb on + strand, within ECD_03564at 3749.347 kb on - strand, within ECD_03564at 3749.380 kb on + strand, within ECD_03564at 3749.383 kb on + strand, within ECD_03564at 3749.384 kb on - strand, within ECD_03564at 3749.384 kb on - strand, within ECD_03564at 3749.468 kb on + strandat 3749.497 kb on + strandat 3749.541 kb on + strandat 3749.546 kb on + strandat 3749.593 kb on + strandat 3749.593 kb on + strandat 3749.593 kb on + strandat 3749.594 kb on - strandat 3749.594 kb on - strandat 3749.635 kb on + strandat 3749.635 kb on + strandat 3749.635 kb on + strandat 3749.635 kb on + strandat 3749.635 kb on + strandat 3749.635 kb on + strandat 3749.635 kb on + strandat 3749.636 kb on - strandat 3749.836 kb on + strand, within ECD_03565at 3749.836 kb on + strand, within ECD_03565at 3749.837 kb on - strand, within ECD_03565at 3749.901 kb on + strand, within ECD_03565at 3749.901 kb on + strand, within ECD_03565at 3749.901 kb on + strand, within ECD_03565at 3749.901 kb on + strand, within ECD_03565at 3749.902 kb on - strand, within ECD_03565at 3749.902 kb on - strand, within ECD_03565at 3749.902 kb on - strand, within ECD_03565at 3749.902 kb on - strand, within ECD_03565at 3749.902 kb on - strand, within ECD_03565at 3749.902 kb on - strand, within ECD_03565at 3750.019 kb on + strand, within ECD_03565at 3750.020 kb on - strand, within ECD_03565at 3750.049 kb on - strand, within ECD_03565at 3750.049 kb on - strand, within ECD_03565at 3750.076 kb on - strand, within ECD_03565at 3750.076 kb on - strand, within ECD_03565at 3750.076 kb on - strand, within ECD_03565at 3750.086 kb on + strand, within ECD_03565at 3750.092 kb on - strand, within ECD_03565at 3750.129 kb on + strand, within ECD_03565at 3750.129 kb on + strand, within ECD_03565at 3750.129 kb on + strand, within ECD_03565at 3750.129 kb on + strand, within ECD_03565at 3750.129 kb on + strand, within ECD_03565at 3750.130 kb on - strand, within ECD_03565at 3750.155 kb on - strand, within ECD_03565at 3750.161 kb on - strand, within ECD_03565at 3750.180 kb on + strand, within ECD_03565at 3750.180 kb on + strand, within ECD_03565at 3750.180 kb on + strand, within ECD_03565at 3750.181 kb on - strand, within ECD_03565at 3750.190 kb on + strand, within ECD_03565at 3750.190 kb on + strand, within ECD_03565at 3750.190 kb on + strand, within ECD_03565at 3750.191 kb on - strand, within ECD_03565at 3750.199 kb on - strand, within ECD_03565at 3750.199 kb on - strand, within ECD_03565at 3750.199 kb on - strand, within ECD_03565at 3750.199 kb on - strand, within ECD_03565at 3750.276 kb on + strand, within ECD_03565at 3750.280 kb on - strand, within ECD_03565at 3750.429 kb on + strand, within ECD_03565at 3750.430 kb on - strand, within ECD_03565at 3750.468 kb on + strand, within ECD_03565at 3750.468 kb on + strand, within ECD_03565at 3750.468 kb on + strand, within ECD_03565at 3750.468 kb on + strand, within ECD_03565at 3750.468 kb on + strand, within ECD_03565at 3750.468 kb on + strand, within ECD_03565at 3750.469 kb on - strand, within ECD_03565at 3750.515 kb on + strand, within ECD_03565at 3750.515 kb on + strand, within ECD_03565

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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3,747,704 - ECD_03563 0.55 +0.1
3,747,711 + ECD_03563 0.55 -0.8
3,747,711 + ECD_03563 0.55 +0.0
3,747,712 - ECD_03563 0.55 -0.5
3,747,833 - ECD_03563 0.62 +0.9
3,747,984 - ECD_03563 0.71 +0.1
3,748,106 + ECD_03563 0.78 -0.7
3,748,107 - ECD_03563 0.78 -1.1
3,748,126 + ECD_03563 0.79 +0.2
3,748,127 - ECD_03563 0.79 +0.0
3,748,127 - ECD_03563 0.79 +0.2
3,748,127 - ECD_03563 0.79 -1.2
3,748,129 + ECD_03563 0.79 +0.5
3,748,130 - ECD_03563 0.79 -0.4
3,748,211 + ECD_03563 0.84 -0.7
3,748,279 - ECD_03563 0.88 -0.4
3,748,332 - +0.9
3,748,380 + +0.8
3,748,489 - +0.2
3,748,499 + -0.2
3,748,500 - +0.0
3,748,527 - +0.1
3,748,537 - -0.3
3,748,701 - -1.2
3,748,764 - ECD_03564 0.13 +0.7
3,748,767 + ECD_03564 0.13 +0.1
3,748,767 + ECD_03564 0.13 -0.1
3,748,767 + ECD_03564 0.13 +1.5
3,748,767 + ECD_03564 0.13 -0.1
3,748,767 + ECD_03564 0.13 +0.2
3,748,845 + ECD_03564 0.22 +0.2
3,748,846 - ECD_03564 0.22 +0.5
3,748,847 + ECD_03564 0.22 +0.2
3,748,847 + ECD_03564 0.22 +1.0
3,748,847 + ECD_03564 0.22 +0.2
3,748,853 - ECD_03564 0.23 -0.2
3,748,913 + ECD_03564 0.29 +0.8
3,748,947 + ECD_03564 0.33 +0.4
3,749,040 + ECD_03564 0.44 +0.0
3,749,042 + ECD_03564 0.44 -0.1
3,749,169 + ECD_03564 0.58 +0.1
3,749,169 + ECD_03564 0.58 +1.0
3,749,227 + ECD_03564 0.65 +0.9
3,749,264 + ECD_03564 0.69 -0.2
3,749,285 + ECD_03564 0.71 +0.8
3,749,343 + ECD_03564 0.78 +0.3
3,749,344 - ECD_03564 0.78 +0.6
3,749,346 + ECD_03564 0.78 +0.5
3,749,347 - ECD_03564 0.78 -1.0
3,749,380 + ECD_03564 0.82 -0.8
3,749,383 + ECD_03564 0.82 -0.9
3,749,384 - ECD_03564 0.82 -0.3
3,749,384 - ECD_03564 0.82 +0.1
3,749,468 + +0.5
3,749,497 + -0.1
3,749,541 + +0.2
3,749,546 + +0.5
3,749,593 + -0.2
3,749,593 + +0.4
3,749,593 + +0.1
3,749,594 - -0.0
3,749,594 - +0.3
3,749,635 + -0.5
3,749,635 + -0.0
3,749,635 + -0.5
3,749,635 + +0.3
3,749,635 + +1.1
3,749,635 + -0.3
3,749,635 + -0.3
3,749,636 - +0.1
3,749,836 + ECD_03565 0.22 +0.2
3,749,836 + ECD_03565 0.22 +2.5
3,749,837 - ECD_03565 0.22 +0.6
3,749,901 + ECD_03565 0.27 +0.3
3,749,901 + ECD_03565 0.27 -0.0
3,749,901 + ECD_03565 0.27 -1.6
3,749,901 + ECD_03565 0.27 +0.2
3,749,902 - ECD_03565 0.27 -0.6
3,749,902 - ECD_03565 0.27 +0.2
3,749,902 - ECD_03565 0.27 -0.1
3,749,902 - ECD_03565 0.27 -2.0
3,749,902 - ECD_03565 0.27 +0.1
3,749,902 - ECD_03565 0.27 -1.0
3,750,019 + ECD_03565 0.36 +0.4
3,750,020 - ECD_03565 0.36 +1.3
3,750,049 - ECD_03565 0.38 -0.0
3,750,049 - ECD_03565 0.38 -0.1
3,750,076 - ECD_03565 0.41 +0.5
3,750,076 - ECD_03565 0.41 +0.1
3,750,076 - ECD_03565 0.41 +0.6
3,750,086 + ECD_03565 0.41 +1.2
3,750,092 - ECD_03565 0.42 +0.6
3,750,129 + ECD_03565 0.45 +0.5
3,750,129 + ECD_03565 0.45 -0.0
3,750,129 + ECD_03565 0.45 +0.7
3,750,129 + ECD_03565 0.45 -0.1
3,750,129 + ECD_03565 0.45 -0.1
3,750,130 - ECD_03565 0.45 -0.3
3,750,155 - ECD_03565 0.46 +0.6
3,750,161 - ECD_03565 0.47 -0.9
3,750,180 + ECD_03565 0.48 -0.1
3,750,180 + ECD_03565 0.48 +0.1
3,750,180 + ECD_03565 0.48 -0.0
3,750,181 - ECD_03565 0.48 -0.6
3,750,190 + ECD_03565 0.49 +0.1
3,750,190 + ECD_03565 0.49 +0.5
3,750,190 + ECD_03565 0.49 -0.3
3,750,191 - ECD_03565 0.49 -0.2
3,750,199 - ECD_03565 0.50 -0.1
3,750,199 - ECD_03565 0.50 +0.2
3,750,199 - ECD_03565 0.50 +0.3
3,750,199 - ECD_03565 0.50 +0.3
3,750,276 + ECD_03565 0.56 +0.7
3,750,280 - ECD_03565 0.56 +0.6
3,750,429 + ECD_03565 0.67 +0.6
3,750,430 - ECD_03565 0.67 -2.0
3,750,468 + ECD_03565 0.70 +0.4
3,750,468 + ECD_03565 0.70 -0.1
3,750,468 + ECD_03565 0.70 -0.5
3,750,468 + ECD_03565 0.70 -0.2
3,750,468 + ECD_03565 0.70 +0.8
3,750,468 + ECD_03565 0.70 +1.8
3,750,469 - ECD_03565 0.70 +0.0
3,750,515 + ECD_03565 0.74 +0.4
3,750,515 + ECD_03565 0.74 +1.6

Or see this region's nucleotide sequence