Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03432 and ECD_03433 overlap by 4 nucleotides ECD_03433 and ECD_03434 overlap by 8 nucleotides ECD_03434 and ECD_03435 overlap by 7 nucleotides
ECD_03432: ECD_03432 - L-xylulose kinase, at 3,609,236 to 3,610,732
_03432
ECD_03433: ECD_03433 - 3-keto-L-gulonate 6-phosphate decarboxylase, at 3,610,729 to 3,611,391
_03433
ECD_03434: ECD_03434 - putative L-xylulose 5-phosphate 3-epimerase, at 3,611,384 to 3,612,244
_03434
ECD_03435: ECD_03435 - L-ribulose-5-phosphate 4-epimerase, at 3,612,238 to 3,612,933
_03435
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-1
0
1 at 3609.735 kb on + strand, within ECD_03432 at 3609.766 kb on + strand, within ECD_03432 at 3609.766 kb on + strand, within ECD_03432 at 3609.767 kb on - strand, within ECD_03432 at 3609.806 kb on + strand, within ECD_03432 at 3609.807 kb on - strand, within ECD_03432 at 3610.006 kb on + strand, within ECD_03432 at 3610.063 kb on - strand, within ECD_03432 at 3610.063 kb on - strand, within ECD_03432 at 3610.085 kb on + strand, within ECD_03432 at 3610.085 kb on + strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.100 kb on + strand, within ECD_03432 at 3610.100 kb on + strand, within ECD_03432 at 3610.141 kb on + strand, within ECD_03432 at 3610.265 kb on + strand, within ECD_03432 at 3610.265 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.375 kb on + strand, within ECD_03432 at 3610.376 kb on - strand, within ECD_03432 at 3610.376 kb on - strand, within ECD_03432 at 3610.425 kb on + strand, within ECD_03432 at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.714 kb on + strand at 3610.728 kb on + strand at 3610.728 kb on + strand at 3610.728 kb on + strand at 3610.729 kb on - strand at 3610.729 kb on - strand at 3610.803 kb on - strand, within ECD_03433 at 3610.803 kb on - strand, within ECD_03433 at 3611.109 kb on + strand, within ECD_03433 at 3611.131 kb on + strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.212 kb on - strand, within ECD_03433 at 3611.367 kb on + strand at 3611.368 kb on - strand at 3611.368 kb on - strand at 3611.408 kb on + strand at 3611.409 kb on - strand at 3611.709 kb on + strand, within ECD_03434 at 3611.741 kb on + strand, within ECD_03434 at 3611.875 kb on + strand, within ECD_03434 at 3611.875 kb on + strand, within ECD_03434 at 3611.876 kb on - strand, within ECD_03434 at 3612.116 kb on - strand, within ECD_03434 at 3612.126 kb on - strand, within ECD_03434 at 3612.236 kb on - strand at 3612.237 kb on + strand at 3612.237 kb on + strand at 3612.238 kb on - strand at 3612.242 kb on + strand at 3612.242 kb on + strand at 3612.242 kb on + strand at 3612.243 kb on - strand at 3612.332 kb on + strand, within ECD_03435 at 3612.356 kb on + strand, within ECD_03435 at 3612.357 kb on - strand, within ECD_03435
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,609,735 + ECD_03432 0.33 -0.3 3,609,766 + ECD_03432 0.35 -0.9 3,609,766 + ECD_03432 0.35 +0.1 3,609,767 - ECD_03432 0.35 +0.7 3,609,806 + ECD_03432 0.38 -0.5 3,609,807 - ECD_03432 0.38 -0.4 3,610,006 + ECD_03432 0.51 +0.3 3,610,063 - ECD_03432 0.55 -0.0 3,610,063 - ECD_03432 0.55 +0.2 3,610,085 + ECD_03432 0.57 -0.9 3,610,085 + ECD_03432 0.57 +0.6 3,610,086 - ECD_03432 0.57 +0.1 3,610,086 - ECD_03432 0.57 -0.1 3,610,086 - ECD_03432 0.57 +0.3 3,610,086 - ECD_03432 0.57 +0.2 3,610,086 - ECD_03432 0.57 +0.2 3,610,092 - ECD_03432 0.57 +0.6 3,610,092 - ECD_03432 0.57 +1.2 3,610,092 - ECD_03432 0.57 +0.3 3,610,100 + ECD_03432 0.58 -0.0 3,610,100 + ECD_03432 0.58 +0.5 3,610,141 + ECD_03432 0.60 +0.7 3,610,265 + ECD_03432 0.69 +0.7 3,610,265 + ECD_03432 0.69 +0.0 3,610,352 + ECD_03432 0.75 +0.7 3,610,352 + ECD_03432 0.75 +0.0 3,610,352 + ECD_03432 0.75 +0.1 3,610,352 + ECD_03432 0.75 -0.2 3,610,352 + ECD_03432 0.75 +0.0 3,610,352 + ECD_03432 0.75 +0.4 3,610,353 - ECD_03432 0.75 +0.1 3,610,353 - ECD_03432 0.75 -0.4 3,610,353 - ECD_03432 0.75 +0.3 3,610,375 + ECD_03432 0.76 -1.1 3,610,376 - ECD_03432 0.76 -0.7 3,610,376 - ECD_03432 0.76 +0.2 3,610,425 + ECD_03432 0.79 +0.3 3,610,631 - +0.6 3,610,631 - -0.1 3,610,631 - +0.1 3,610,631 - +0.2 3,610,714 + -0.2 3,610,728 + +0.0 3,610,728 + -0.4 3,610,728 + +0.2 3,610,729 - -0.3 3,610,729 - -1.0 3,610,803 - ECD_03433 0.11 -0.2 3,610,803 - ECD_03433 0.11 -0.2 3,611,109 + ECD_03433 0.57 -0.2 3,611,131 + ECD_03433 0.61 -0.1 3,611,132 - ECD_03433 0.61 +1.6 3,611,132 - ECD_03433 0.61 +1.2 3,611,132 - ECD_03433 0.61 +1.6 3,611,212 - ECD_03433 0.73 +1.2 3,611,367 + +0.3 3,611,368 - -0.1 3,611,368 - +0.4 3,611,408 + -1.1 3,611,409 - -0.2 3,611,709 + ECD_03434 0.38 -1.2 3,611,741 + ECD_03434 0.41 +0.3 3,611,875 + ECD_03434 0.57 +0.9 3,611,875 + ECD_03434 0.57 -0.0 3,611,876 - ECD_03434 0.57 +0.2 3,612,116 - ECD_03434 0.85 -0.0 3,612,126 - ECD_03434 0.86 -0.3 3,612,236 - +0.1 3,612,237 + -0.3 3,612,237 + +0.4 3,612,238 - +0.9 3,612,242 + +0.4 3,612,242 + +0.2 3,612,242 + -0.4 3,612,243 - -0.0 3,612,332 + ECD_03435 0.14 -0.0 3,612,356 + ECD_03435 0.17 +1.2 3,612,357 - ECD_03435 0.17 +0.1
Or see this region's nucleotide sequence