Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03367 and ECD_03368 are separated by 50 nucleotides ECD_03368 and ECD_03369 are separated by 447 nucleotides
ECD_03367: ECD_03367 - cytoplasmic trehalase, at 3,530,780 to 3,532,429
_03367
ECD_03368: ECD_03368 - putative DNA-binding transcriptional response regulator, at 3,532,480 to 3,533,082
_03368
ECD_03369: ECD_03369 - LysR family putative transcriptional regulator, at 3,533,530 to 3,534,501
_03369
Position (kb)
3532
3533
3534 Strain fitness (log2 ratio)
-1
0
1
2 at 3531.526 kb on + strand, within ECD_03367 at 3531.527 kb on - strand, within ECD_03367 at 3531.536 kb on + strand, within ECD_03367 at 3531.537 kb on - strand, within ECD_03367 at 3531.537 kb on - strand, within ECD_03367 at 3531.574 kb on + strand, within ECD_03367 at 3531.584 kb on + strand, within ECD_03367 at 3531.719 kb on + strand, within ECD_03367 at 3531.758 kb on + strand, within ECD_03367 at 3531.759 kb on - strand, within ECD_03367 at 3531.759 kb on - strand, within ECD_03367 at 3531.782 kb on - strand, within ECD_03367 at 3531.805 kb on + strand, within ECD_03367 at 3531.980 kb on + strand, within ECD_03367 at 3532.047 kb on - strand, within ECD_03367 at 3532.095 kb on + strand, within ECD_03367 at 3532.163 kb on - strand, within ECD_03367 at 3532.185 kb on + strand, within ECD_03367 at 3532.185 kb on + strand, within ECD_03367 at 3532.186 kb on - strand, within ECD_03367 at 3532.211 kb on - strand, within ECD_03367 at 3532.217 kb on + strand, within ECD_03367 at 3532.218 kb on - strand, within ECD_03367 at 3532.310 kb on + strand at 3532.427 kb on + strand at 3532.431 kb on - strand at 3532.491 kb on + strand at 3532.491 kb on + strand at 3532.491 kb on + strand at 3532.492 kb on - strand at 3532.492 kb on - strand at 3532.495 kb on + strand at 3532.496 kb on - strand at 3532.564 kb on + strand, within ECD_03368 at 3532.674 kb on + strand, within ECD_03368 at 3532.674 kb on + strand, within ECD_03368 at 3532.675 kb on - strand, within ECD_03368 at 3532.738 kb on - strand, within ECD_03368 at 3532.738 kb on - strand, within ECD_03368 at 3532.797 kb on + strand, within ECD_03368 at 3532.807 kb on - strand, within ECD_03368 at 3532.816 kb on + strand, within ECD_03368 at 3532.898 kb on + strand, within ECD_03368 at 3532.932 kb on + strand, within ECD_03368 at 3532.932 kb on + strand, within ECD_03368 at 3532.933 kb on - strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.937 kb on - strand, within ECD_03368 at 3532.937 kb on - strand, within ECD_03368 at 3532.970 kb on - strand, within ECD_03368 at 3533.013 kb on + strand, within ECD_03368 at 3533.046 kb on + strand at 3533.050 kb on + strand at 3533.075 kb on - strand at 3533.075 kb on - strand at 3533.219 kb on + strand at 3533.220 kb on - strand at 3533.220 kb on - strand at 3533.289 kb on - strand at 3533.289 kb on - strand at 3533.462 kb on + strand at 3533.568 kb on - strand at 3533.711 kb on + strand, within ECD_03369 at 3533.711 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.795 kb on - strand, within ECD_03369 at 3533.795 kb on - strand, within ECD_03369 at 3533.798 kb on - strand, within ECD_03369 at 3533.869 kb on - strand, within ECD_03369 at 3533.869 kb on - strand, within ECD_03369 at 3533.883 kb on - strand, within ECD_03369 at 3533.921 kb on + strand, within ECD_03369 at 3533.997 kb on - strand, within ECD_03369 at 3534.000 kb on + strand, within ECD_03369
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,531,526 + ECD_03367 0.45 -0.0 3,531,527 - ECD_03367 0.45 +0.5 3,531,536 + ECD_03367 0.46 -0.1 3,531,537 - ECD_03367 0.46 +0.3 3,531,537 - ECD_03367 0.46 -0.6 3,531,574 + ECD_03367 0.48 +0.9 3,531,584 + ECD_03367 0.49 +0.8 3,531,719 + ECD_03367 0.57 -0.3 3,531,758 + ECD_03367 0.59 +0.5 3,531,759 - ECD_03367 0.59 +0.3 3,531,759 - ECD_03367 0.59 +0.1 3,531,782 - ECD_03367 0.61 -0.4 3,531,805 + ECD_03367 0.62 +0.4 3,531,980 + ECD_03367 0.73 -0.3 3,532,047 - ECD_03367 0.77 -1.1 3,532,095 + ECD_03367 0.80 +0.4 3,532,163 - ECD_03367 0.84 +0.2 3,532,185 + ECD_03367 0.85 -0.3 3,532,185 + ECD_03367 0.85 -1.3 3,532,186 - ECD_03367 0.85 +0.4 3,532,211 - ECD_03367 0.87 +0.5 3,532,217 + ECD_03367 0.87 -0.6 3,532,218 - ECD_03367 0.87 -0.0 3,532,310 + +0.4 3,532,427 + +0.6 3,532,431 - +0.1 3,532,491 + +0.4 3,532,491 + -0.6 3,532,491 + +0.9 3,532,492 - +1.0 3,532,492 - +0.1 3,532,495 + +0.3 3,532,496 - +1.8 3,532,564 + ECD_03368 0.14 +0.5 3,532,674 + ECD_03368 0.32 +0.5 3,532,674 + ECD_03368 0.32 +0.1 3,532,675 - ECD_03368 0.32 +0.8 3,532,738 - ECD_03368 0.43 +0.3 3,532,738 - ECD_03368 0.43 +0.6 3,532,797 + ECD_03368 0.53 -0.5 3,532,807 - ECD_03368 0.54 +0.1 3,532,816 + ECD_03368 0.56 -0.9 3,532,898 + ECD_03368 0.69 +0.4 3,532,932 + ECD_03368 0.75 -0.4 3,532,932 + ECD_03368 0.75 +0.4 3,532,933 - ECD_03368 0.75 +0.7 3,532,936 + ECD_03368 0.76 -0.2 3,532,936 + ECD_03368 0.76 -0.5 3,532,936 + ECD_03368 0.76 +0.1 3,532,936 + ECD_03368 0.76 -0.4 3,532,936 + ECD_03368 0.76 +0.7 3,532,937 - ECD_03368 0.76 +0.0 3,532,937 - ECD_03368 0.76 -0.1 3,532,970 - ECD_03368 0.81 -1.0 3,533,013 + ECD_03368 0.88 -1.1 3,533,046 + -0.1 3,533,050 + -0.2 3,533,075 - +0.2 3,533,075 - -0.1 3,533,219 + -0.0 3,533,220 - +0.7 3,533,220 - +1.2 3,533,289 - +0.4 3,533,289 - -0.5 3,533,462 + -0.4 3,533,568 - +0.6 3,533,711 + ECD_03369 0.19 -0.2 3,533,711 + ECD_03369 0.19 -1.0 3,533,794 + ECD_03369 0.27 -0.1 3,533,794 + ECD_03369 0.27 -0.3 3,533,794 + ECD_03369 0.27 -0.1 3,533,794 + ECD_03369 0.27 -0.2 3,533,795 - ECD_03369 0.27 +0.4 3,533,795 - ECD_03369 0.27 -0.4 3,533,798 - ECD_03369 0.28 -0.0 3,533,869 - ECD_03369 0.35 +0.4 3,533,869 - ECD_03369 0.35 -0.7 3,533,883 - ECD_03369 0.36 +0.0 3,533,921 + ECD_03369 0.40 -0.2 3,533,997 - ECD_03369 0.48 +0.2 3,534,000 + ECD_03369 0.48 +1.0
Or see this region's nucleotide sequence