Strain Fitness in Escherichia coli BL21 around ECD_02953

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02951 and ECD_02952 overlap by 4 nucleotidesECD_02952 and ECD_02953 are separated by 283 nucleotidesECD_02953 and ECD_02954 are separated by 84 nucleotidesECD_02954 and ECD_02955 are separated by 76 nucleotides ECD_02951: ECD_02951 - antitoxinof the HigB-HigA toxin-antitoxin system, at 3,099,810 to 3,100,226 _02951 ECD_02952: ECD_02952 - mRNA interferase toxin of the HigB-HigA toxin-antitoxin system, at 3,100,223 to 3,100,537 _02952 ECD_02953: ECD_02953 - 23S rRNA m(2)G1835 methyltransferase, SAM-dependent, at 3,100,821 to 3,101,957 _02953 ECD_02954: ECD_02954 - putative metal dependent hydrolase, at 3,102,042 to 3,102,545 _02954 ECD_02955: ECD_02955 - DUF218 superfamily protein, at 3,102,622 to 3,103,314 _02955 Position (kb) 3100 3101 3102Strain fitness (log2 ratio) -2 -1 0 1 2at 3099.877 kb on - strand, within ECD_02951at 3100.238 kb on - strandat 3100.267 kb on - strand, within ECD_02952at 3100.292 kb on + strand, within ECD_02952at 3100.292 kb on + strand, within ECD_02952at 3100.293 kb on - strand, within ECD_02952at 3100.293 kb on - strand, within ECD_02952at 3100.293 kb on - strand, within ECD_02952at 3100.293 kb on - strand, within ECD_02952at 3100.293 kb on - strand, within ECD_02952at 3100.293 kb on - strand, within ECD_02952at 3100.293 kb on - strand, within ECD_02952at 3100.293 kb on - strand, within ECD_02952at 3100.297 kb on - strand, within ECD_02952at 3100.297 kb on - strand, within ECD_02952at 3100.328 kb on + strand, within ECD_02952at 3100.328 kb on + strand, within ECD_02952at 3100.338 kb on - strand, within ECD_02952at 3100.365 kb on + strand, within ECD_02952at 3100.380 kb on + strand, within ECD_02952at 3100.390 kb on + strand, within ECD_02952at 3100.626 kb on + strandat 3100.657 kb on + strandat 3100.760 kb on - strandat 3100.868 kb on + strandat 3100.880 kb on + strandat 3100.880 kb on + strandat 3100.881 kb on - strandat 3100.921 kb on + strandat 3100.921 kb on + strandat 3100.922 kb on - strandat 3100.947 kb on - strand, within ECD_02953at 3100.948 kb on + strand, within ECD_02953at 3100.948 kb on + strand, within ECD_02953at 3100.948 kb on + strand, within ECD_02953at 3100.948 kb on + strand, within ECD_02953at 3100.949 kb on - strand, within ECD_02953at 3101.103 kb on - strand, within ECD_02953at 3101.297 kb on + strand, within ECD_02953at 3101.370 kb on - strand, within ECD_02953at 3101.435 kb on + strand, within ECD_02953at 3101.436 kb on - strand, within ECD_02953at 3101.543 kb on + strand, within ECD_02953at 3101.544 kb on - strand, within ECD_02953at 3101.546 kb on + strand, within ECD_02953at 3101.546 kb on + strand, within ECD_02953at 3101.546 kb on + strand, within ECD_02953at 3101.546 kb on + strand, within ECD_02953at 3101.546 kb on + strand, within ECD_02953at 3101.546 kb on + strand, within ECD_02953at 3101.547 kb on - strand, within ECD_02953at 3101.547 kb on - strand, within ECD_02953at 3101.547 kb on - strand, within ECD_02953at 3101.547 kb on - strand, within ECD_02953at 3101.706 kb on + strand, within ECD_02953at 3101.707 kb on - strand, within ECD_02953at 3101.737 kb on + strand, within ECD_02953at 3101.737 kb on + strand, within ECD_02953at 3101.737 kb on + strand, within ECD_02953at 3101.737 kb on + strand, within ECD_02953at 3101.738 kb on - strand, within ECD_02953at 3101.738 kb on - strand, within ECD_02953at 3101.763 kb on - strand, within ECD_02953at 3101.857 kb on + strandat 3101.858 kb on - strandat 3101.858 kb on - strandat 3101.858 kb on - strandat 3101.919 kb on + strandat 3101.920 kb on - strandat 3101.946 kb on + strandat 3101.947 kb on - strandat 3101.947 kb on - strandat 3102.011 kb on + strandat 3102.012 kb on - strandat 3102.012 kb on - strandat 3102.012 kb on - strandat 3102.014 kb on - strandat 3102.053 kb on + strandat 3102.053 kb on + strandat 3102.053 kb on + strandat 3102.053 kb on + strandat 3102.053 kb on + strandat 3102.054 kb on - strandat 3102.054 kb on - strandat 3102.054 kb on - strandat 3102.054 kb on - strandat 3102.058 kb on - strandat 3102.083 kb on - strandat 3102.083 kb on - strandat 3102.162 kb on + strand, within ECD_02954at 3102.163 kb on - strand, within ECD_02954at 3102.189 kb on + strand, within ECD_02954at 3102.190 kb on - strand, within ECD_02954at 3102.249 kb on + strand, within ECD_02954at 3102.258 kb on - strand, within ECD_02954at 3102.293 kb on + strand, within ECD_02954at 3102.293 kb on + strand, within ECD_02954at 3102.294 kb on - strand, within ECD_02954at 3102.448 kb on - strand, within ECD_02954at 3102.465 kb on - strand, within ECD_02954at 3102.655 kb on - strandat 3102.655 kb on - strandat 3102.692 kb on + strand, within ECD_02955at 3102.692 kb on + strand, within ECD_02955at 3102.698 kb on + strand, within ECD_02955at 3102.698 kb on + strand, within ECD_02955at 3102.698 kb on + strand, within ECD_02955at 3102.698 kb on + strand, within ECD_02955at 3102.699 kb on - strand, within ECD_02955at 3102.806 kb on + strand, within ECD_02955at 3102.807 kb on - strand, within ECD_02955at 3102.841 kb on - strand, within ECD_02955at 3102.849 kb on + strand, within ECD_02955at 3102.850 kb on - strand, within ECD_02955at 3102.871 kb on + strand, within ECD_02955at 3102.872 kb on - strand, within ECD_02955at 3102.872 kb on - strand, within ECD_02955at 3102.903 kb on - strand, within ECD_02955at 3102.903 kb on - strand, within ECD_02955at 3102.903 kb on - strand, within ECD_02955at 3102.903 kb on - strand, within ECD_02955at 3102.903 kb on - strand, within ECD_02955at 3102.945 kb on + strand, within ECD_02955at 3102.945 kb on + strand, within ECD_02955at 3102.945 kb on + strand, within ECD_02955at 3102.946 kb on - strand, within ECD_02955

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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3,099,877 - ECD_02951 0.16 -0.6
3,100,238 - -0.5
3,100,267 - ECD_02952 0.14 -0.0
3,100,292 + ECD_02952 0.22 +0.2
3,100,292 + ECD_02952 0.22 -0.3
3,100,293 - ECD_02952 0.22 +0.1
3,100,293 - ECD_02952 0.22 -0.5
3,100,293 - ECD_02952 0.22 +1.1
3,100,293 - ECD_02952 0.22 -1.3
3,100,293 - ECD_02952 0.22 +0.5
3,100,293 - ECD_02952 0.22 -0.6
3,100,293 - ECD_02952 0.22 +0.7
3,100,293 - ECD_02952 0.22 +0.3
3,100,297 - ECD_02952 0.23 +0.3
3,100,297 - ECD_02952 0.23 +1.0
3,100,328 + ECD_02952 0.33 -0.1
3,100,328 + ECD_02952 0.33 +0.5
3,100,338 - ECD_02952 0.37 -0.2
3,100,365 + ECD_02952 0.45 -0.2
3,100,380 + ECD_02952 0.50 -1.0
3,100,390 + ECD_02952 0.53 -0.4
3,100,626 + +1.0
3,100,657 + -0.5
3,100,760 - +0.4
3,100,868 + +0.0
3,100,880 + +0.6
3,100,880 + -0.7
3,100,881 - -0.1
3,100,921 + +0.4
3,100,921 + -0.6
3,100,922 - +0.4
3,100,947 - ECD_02953 0.11 +0.4
3,100,948 + ECD_02953 0.11 +0.2
3,100,948 + ECD_02953 0.11 +0.4
3,100,948 + ECD_02953 0.11 +0.4
3,100,948 + ECD_02953 0.11 +0.2
3,100,949 - ECD_02953 0.11 +0.4
3,101,103 - ECD_02953 0.25 -0.3
3,101,297 + ECD_02953 0.42 +0.1
3,101,370 - ECD_02953 0.48 +0.0
3,101,435 + ECD_02953 0.54 -1.7
3,101,436 - ECD_02953 0.54 +0.1
3,101,543 + ECD_02953 0.64 -2.2
3,101,544 - ECD_02953 0.64 -0.4
3,101,546 + ECD_02953 0.64 -0.9
3,101,546 + ECD_02953 0.64 +0.4
3,101,546 + ECD_02953 0.64 -1.0
3,101,546 + ECD_02953 0.64 -1.5
3,101,546 + ECD_02953 0.64 -0.5
3,101,546 + ECD_02953 0.64 -0.0
3,101,547 - ECD_02953 0.64 +0.0
3,101,547 - ECD_02953 0.64 -0.7
3,101,547 - ECD_02953 0.64 +1.3
3,101,547 - ECD_02953 0.64 +0.2
3,101,706 + ECD_02953 0.78 -0.9
3,101,707 - ECD_02953 0.78 -0.5
3,101,737 + ECD_02953 0.81 +0.3
3,101,737 + ECD_02953 0.81 -0.7
3,101,737 + ECD_02953 0.81 -0.3
3,101,737 + ECD_02953 0.81 -0.8
3,101,738 - ECD_02953 0.81 -0.5
3,101,738 - ECD_02953 0.81 -0.3
3,101,763 - ECD_02953 0.83 -0.1
3,101,857 + +0.5
3,101,858 - +0.7
3,101,858 - -0.4
3,101,858 - -0.5
3,101,919 + -1.8
3,101,920 - +0.4
3,101,946 + +0.2
3,101,947 - -0.8
3,101,947 - -0.1
3,102,011 + +0.1
3,102,012 - -0.2
3,102,012 - +0.3
3,102,012 - +0.4
3,102,014 - -0.1
3,102,053 + +0.5
3,102,053 + +0.5
3,102,053 + -0.3
3,102,053 + +1.5
3,102,053 + -0.2
3,102,054 - +2.3
3,102,054 - -1.0
3,102,054 - +0.1
3,102,054 - -1.4
3,102,058 - +0.0
3,102,083 - +0.4
3,102,083 - +0.9
3,102,162 + ECD_02954 0.24 -0.2
3,102,163 - ECD_02954 0.24 -0.1
3,102,189 + ECD_02954 0.29 +0.0
3,102,190 - ECD_02954 0.29 +0.7
3,102,249 + ECD_02954 0.41 +0.2
3,102,258 - ECD_02954 0.43 +0.2
3,102,293 + ECD_02954 0.50 -0.3
3,102,293 + ECD_02954 0.50 -0.4
3,102,294 - ECD_02954 0.50 -0.9
3,102,448 - ECD_02954 0.81 -0.7
3,102,465 - ECD_02954 0.84 -0.6
3,102,655 - -1.9
3,102,655 - -0.7
3,102,692 + ECD_02955 0.10 +0.1
3,102,692 + ECD_02955 0.10 -0.3
3,102,698 + ECD_02955 0.11 -0.1
3,102,698 + ECD_02955 0.11 -0.3
3,102,698 + ECD_02955 0.11 -0.5
3,102,698 + ECD_02955 0.11 +0.6
3,102,699 - ECD_02955 0.11 -0.8
3,102,806 + ECD_02955 0.27 -0.1
3,102,807 - ECD_02955 0.27 +0.0
3,102,841 - ECD_02955 0.32 -1.3
3,102,849 + ECD_02955 0.33 -0.6
3,102,850 - ECD_02955 0.33 +0.6
3,102,871 + ECD_02955 0.36 -0.6
3,102,872 - ECD_02955 0.36 +0.1
3,102,872 - ECD_02955 0.36 -1.6
3,102,903 - ECD_02955 0.41 +0.2
3,102,903 - ECD_02955 0.41 -1.0
3,102,903 - ECD_02955 0.41 -0.0
3,102,903 - ECD_02955 0.41 +0.7
3,102,903 - ECD_02955 0.41 +0.2
3,102,945 + ECD_02955 0.47 +0.3
3,102,945 + ECD_02955 0.47 -1.2
3,102,945 + ECD_02955 0.47 +0.1
3,102,946 - ECD_02955 0.47 -2.0

Or see this region's nucleotide sequence