Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02928 and ECD_02929 are separated by 104 nucleotides ECD_02929 and ECD_02930 are separated by 12 nucleotides ECD_02930 and ECD_02931 are separated by 206 nucleotides
ECD_02928: ECD_02928 - dihydroneopterin aldolase and dihydroneopterin triphosphate 2'-epimerase, at 3,070,303 to 3,070,671
_02928
ECD_02929: ECD_02929 - putative glycerol-3-phosphate acyltransferase, at 3,070,776 to 3,071,393
_02929
ECD_02930: ECD_02930 - transcriptional activator of ttdABT, at 3,071,406 to 3,072,338
_02930
ECD_02931: ECD_02931 - L-tartrate dehydratase, alpha subunit, at 3,072,545 to 3,073,456
_02931
Position (kb)
3071
3072
3073 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3070.726 kb on - strand at 3070.726 kb on - strand at 3070.729 kb on - strand at 3070.775 kb on + strand at 3070.775 kb on + strand at 3070.775 kb on + strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.915 kb on + strand, within ECD_02929 at 3070.915 kb on + strand, within ECD_02929 at 3070.916 kb on - strand, within ECD_02929 at 3070.916 kb on - strand, within ECD_02929 at 3070.920 kb on - strand, within ECD_02929 at 3070.942 kb on + strand, within ECD_02929 at 3071.002 kb on + strand, within ECD_02929 at 3071.003 kb on - strand, within ECD_02929 at 3071.029 kb on + strand, within ECD_02929 at 3071.029 kb on + strand, within ECD_02929 at 3071.030 kb on - strand, within ECD_02929 at 3071.030 kb on - strand, within ECD_02929 at 3071.030 kb on - strand, within ECD_02929 at 3071.179 kb on + strand, within ECD_02929 at 3071.179 kb on + strand, within ECD_02929 at 3071.180 kb on - strand, within ECD_02929 at 3071.180 kb on - strand, within ECD_02929 at 3071.236 kb on - strand, within ECD_02929 at 3071.250 kb on - strand, within ECD_02929 at 3071.407 kb on + strand at 3071.407 kb on + strand at 3071.529 kb on - strand, within ECD_02930 at 3071.615 kb on + strand, within ECD_02930 at 3071.616 kb on - strand, within ECD_02930 at 3071.616 kb on - strand, within ECD_02930 at 3072.562 kb on + strand at 3072.580 kb on + strand at 3072.654 kb on + strand, within ECD_02931 at 3072.663 kb on + strand, within ECD_02931 at 3072.663 kb on + strand, within ECD_02931 at 3072.698 kb on - strand, within ECD_02931 at 3072.701 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.707 kb on - strand, within ECD_02931 at 3072.775 kb on + strand, within ECD_02931 at 3072.776 kb on - strand, within ECD_02931 at 3072.776 kb on - strand, within ECD_02931 at 3072.776 kb on - strand, within ECD_02931 at 3072.831 kb on + strand, within ECD_02931 at 3072.874 kb on - strand, within ECD_02931 at 3072.906 kb on + strand, within ECD_02931 at 3072.992 kb on + strand, within ECD_02931 at 3072.993 kb on - strand, within ECD_02931 at 3073.017 kb on + strand, within ECD_02931 at 3073.239 kb on + strand, within ECD_02931 at 3073.240 kb on - strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.315 kb on - strand, within ECD_02931 at 3073.315 kb on - strand, within ECD_02931 at 3073.315 kb on - strand, within ECD_02931 at 3073.315 kb on - strand, within ECD_02931 at 3073.315 kb on - strand, within ECD_02931 at 3073.318 kb on + strand, within ECD_02931 at 3073.318 kb on + strand, within ECD_02931
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,070,726 - -0.7 3,070,726 - -0.5 3,070,729 - -1.2 3,070,775 + +0.7 3,070,775 + +0.2 3,070,775 + -0.6 3,070,776 - -0.2 3,070,776 - -0.2 3,070,776 - +0.6 3,070,776 - -0.3 3,070,776 - -0.1 3,070,776 - +0.8 3,070,915 + ECD_02929 0.22 +0.3 3,070,915 + ECD_02929 0.22 -0.4 3,070,916 - ECD_02929 0.23 -0.3 3,070,916 - ECD_02929 0.23 -0.1 3,070,920 - ECD_02929 0.23 +0.7 3,070,942 + ECD_02929 0.27 +1.1 3,071,002 + ECD_02929 0.37 -0.3 3,071,003 - ECD_02929 0.37 -0.4 3,071,029 + ECD_02929 0.41 +0.1 3,071,029 + ECD_02929 0.41 -0.1 3,071,030 - ECD_02929 0.41 -0.3 3,071,030 - ECD_02929 0.41 +0.2 3,071,030 - ECD_02929 0.41 -1.5 3,071,179 + ECD_02929 0.65 -1.7 3,071,179 + ECD_02929 0.65 +0.6 3,071,180 - ECD_02929 0.65 -0.3 3,071,180 - ECD_02929 0.65 +0.1 3,071,236 - ECD_02929 0.74 +0.3 3,071,250 - ECD_02929 0.77 +0.2 3,071,407 + -1.4 3,071,407 + -0.6 3,071,529 - ECD_02930 0.13 -0.9 3,071,615 + ECD_02930 0.22 +0.2 3,071,616 - ECD_02930 0.23 +0.2 3,071,616 - ECD_02930 0.23 +0.5 3,072,562 + +1.9 3,072,580 + +0.3 3,072,654 + ECD_02931 0.12 +0.4 3,072,663 + ECD_02931 0.13 +0.3 3,072,663 + ECD_02931 0.13 -2.1 3,072,698 - ECD_02931 0.17 -0.7 3,072,701 + ECD_02931 0.17 -0.0 3,072,706 + ECD_02931 0.18 +1.5 3,072,706 + ECD_02931 0.18 -0.2 3,072,706 + ECD_02931 0.18 +0.3 3,072,706 + ECD_02931 0.18 -0.0 3,072,706 + ECD_02931 0.18 +0.3 3,072,706 + ECD_02931 0.18 +0.0 3,072,707 - ECD_02931 0.18 +0.3 3,072,775 + ECD_02931 0.25 +0.1 3,072,776 - ECD_02931 0.25 -0.7 3,072,776 - ECD_02931 0.25 -0.0 3,072,776 - ECD_02931 0.25 +0.2 3,072,831 + ECD_02931 0.31 -0.0 3,072,874 - ECD_02931 0.36 +0.2 3,072,906 + ECD_02931 0.40 +0.2 3,072,992 + ECD_02931 0.49 +0.8 3,072,993 - ECD_02931 0.49 -0.9 3,073,017 + ECD_02931 0.52 +0.7 3,073,239 + ECD_02931 0.76 -0.9 3,073,240 - ECD_02931 0.76 +0.8 3,073,314 + ECD_02931 0.84 +0.3 3,073,314 + ECD_02931 0.84 -0.6 3,073,314 + ECD_02931 0.84 -0.3 3,073,314 + ECD_02931 0.84 +0.6 3,073,314 + ECD_02931 0.84 -2.2 3,073,314 + ECD_02931 0.84 +0.7 3,073,314 + ECD_02931 0.84 -0.7 3,073,314 + ECD_02931 0.84 -0.6 3,073,314 + ECD_02931 0.84 +0.0 3,073,315 - ECD_02931 0.84 -0.3 3,073,315 - ECD_02931 0.84 +0.9 3,073,315 - ECD_02931 0.84 +0.1 3,073,315 - ECD_02931 0.84 +0.7 3,073,315 - ECD_02931 0.84 -0.4 3,073,318 + ECD_02931 0.85 -0.0 3,073,318 + ECD_02931 0.85 +0.5
Or see this region's nucleotide sequence