Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02907 and ECD_02908 overlap by 1 nucleotides ECD_02908 and ECD_02909 overlap by 113 nucleotides ECD_02909 and ECD_02910 are separated by 5 nucleotides
ECD_02907: ECD_02907 - transport channel, at 3,045,552 to 3,047,033
_02907
ECD_02908: ECD_02908 - hypothetical protein, at 3,047,033 to 3,047,293
_02908
ECD_02909: ECD_02909 - DUF1190 family protein, at 3,047,181 to 3,047,852
_02909
ECD_02910: ECD_02910 - ATP-Grasp family ATPase, at 3,047,858 to 3,049,018
_02910
Position (kb)
3047
3048 Strain fitness (log2 ratio)
-2
-1
0
1 at 3046.182 kb on + strand, within ECD_02907 at 3046.182 kb on + strand, within ECD_02907 at 3046.288 kb on + strand, within ECD_02907 at 3046.366 kb on + strand, within ECD_02907 at 3046.399 kb on - strand, within ECD_02907 at 3046.628 kb on + strand, within ECD_02907 at 3046.628 kb on + strand, within ECD_02907 at 3046.647 kb on + strand, within ECD_02907 at 3046.718 kb on + strand, within ECD_02907 at 3046.934 kb on + strand at 3046.934 kb on + strand at 3046.934 kb on + strand at 3047.068 kb on - strand, within ECD_02908 at 3047.068 kb on - strand, within ECD_02908 at 3047.090 kb on + strand, within ECD_02908 at 3047.090 kb on + strand, within ECD_02908 at 3047.091 kb on - strand, within ECD_02908 at 3047.141 kb on + strand, within ECD_02908 at 3047.153 kb on + strand, within ECD_02908 at 3047.154 kb on - strand, within ECD_02908 at 3047.157 kb on + strand, within ECD_02908 at 3047.157 kb on + strand, within ECD_02908 at 3047.157 kb on + strand, within ECD_02908 at 3047.158 kb on - strand, within ECD_02908 at 3047.158 kb on - strand, within ECD_02908 at 3047.372 kb on + strand, within ECD_02909 at 3047.373 kb on - strand, within ECD_02909 at 3047.424 kb on + strand, within ECD_02909 at 3047.658 kb on + strand, within ECD_02909 at 3047.660 kb on + strand, within ECD_02909 at 3047.682 kb on + strand, within ECD_02909 at 3047.804 kb on + strand at 3047.804 kb on + strand at 3047.805 kb on - strand at 3047.872 kb on + strand at 3047.967 kb on - strand at 3047.969 kb on + strand at 3047.969 kb on + strand at 3048.149 kb on + strand, within ECD_02910 at 3048.230 kb on + strand, within ECD_02910 at 3048.557 kb on + strand, within ECD_02910 at 3048.646 kb on + strand, within ECD_02910 at 3048.752 kb on + strand, within ECD_02910
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,046,182 + ECD_02907 0.43 -0.5 3,046,182 + ECD_02907 0.43 -2.4 3,046,288 + ECD_02907 0.50 +1.3 3,046,366 + ECD_02907 0.55 +0.3 3,046,399 - ECD_02907 0.57 -0.3 3,046,628 + ECD_02907 0.73 -0.3 3,046,628 + ECD_02907 0.73 -0.1 3,046,647 + ECD_02907 0.74 -1.1 3,046,718 + ECD_02907 0.79 -0.5 3,046,934 + -0.1 3,046,934 + -0.4 3,046,934 + -0.3 3,047,068 - ECD_02908 0.13 -0.5 3,047,068 - ECD_02908 0.13 -0.2 3,047,090 + ECD_02908 0.22 +0.6 3,047,090 + ECD_02908 0.22 -0.2 3,047,091 - ECD_02908 0.22 -0.1 3,047,141 + ECD_02908 0.41 -0.2 3,047,153 + ECD_02908 0.46 +0.1 3,047,154 - ECD_02908 0.46 +1.0 3,047,157 + ECD_02908 0.48 +0.3 3,047,157 + ECD_02908 0.48 +0.3 3,047,157 + ECD_02908 0.48 -0.0 3,047,158 - ECD_02908 0.48 +0.6 3,047,158 - ECD_02908 0.48 +0.6 3,047,372 + ECD_02909 0.28 +1.5 3,047,373 - ECD_02909 0.29 +0.4 3,047,424 + ECD_02909 0.36 +0.6 3,047,658 + ECD_02909 0.71 +0.9 3,047,660 + ECD_02909 0.71 +0.1 3,047,682 + ECD_02909 0.75 +1.3 3,047,804 + +1.7 3,047,804 + +0.0 3,047,805 - -0.3 3,047,872 + -0.6 3,047,967 - -0.9 3,047,969 + +0.2 3,047,969 + -0.1 3,048,149 + ECD_02910 0.25 -0.6 3,048,230 + ECD_02910 0.32 +0.5 3,048,557 + ECD_02910 0.60 +0.2 3,048,646 + ECD_02910 0.68 -0.6 3,048,752 + ECD_02910 0.77 -1.1
Or see this region's nucleotide sequence