Strain Fitness in Escherichia coli BL21 around ECD_02856

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02855 and ECD_02856 overlap by 85 nucleotidesECD_02856 and ECD_02857 are separated by 30 nucleotidesECD_02857 and ECD_02858 are separated by 11 nucleotides ECD_02855: ECD_02855 - hypothetical protein, at 2,994,920 to 2,996,080 _02855 ECD_02856: ECD_02856 - hypothetical protein, at 2,995,996 to 2,997,066 _02856 ECD_02857: ECD_02857 - hypothetical protein, at 2,997,097 to 2,997,657 _02857 ECD_02858: ECD_02858 - hypothetical protein, at 2,997,669 to 2,998,493 _02858 Position (kb) 2995 2996 2997 2998Strain fitness (log2 ratio) -1 0 1at 2995.016 kb on + strandat 2995.044 kb on + strand, within ECD_02855at 2995.233 kb on + strand, within ECD_02855at 2995.234 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.243 kb on - strand, within ECD_02855at 2995.287 kb on - strand, within ECD_02855at 2995.338 kb on - strand, within ECD_02855at 2995.434 kb on + strand, within ECD_02855at 2995.435 kb on - strand, within ECD_02855at 2995.435 kb on - strand, within ECD_02855at 2995.556 kb on - strand, within ECD_02855at 2995.626 kb on - strand, within ECD_02855at 2995.935 kb on - strand, within ECD_02855at 2995.976 kb on + strandat 2996.154 kb on + strand, within ECD_02856at 2996.176 kb on + strand, within ECD_02856at 2996.374 kb on + strand, within ECD_02856at 2996.374 kb on + strand, within ECD_02856at 2996.374 kb on + strand, within ECD_02856at 2996.375 kb on - strand, within ECD_02856at 2996.375 kb on - strand, within ECD_02856at 2996.535 kb on + strand, within ECD_02856at 2996.562 kb on + strand, within ECD_02856at 2996.562 kb on + strand, within ECD_02856at 2996.690 kb on + strand, within ECD_02856at 2996.690 kb on + strand, within ECD_02856at 2996.708 kb on + strand, within ECD_02856at 2996.708 kb on + strand, within ECD_02856at 2996.708 kb on + strand, within ECD_02856at 2996.708 kb on + strand, within ECD_02856at 2996.708 kb on + strand, within ECD_02856at 2996.708 kb on + strand, within ECD_02856at 2996.708 kb on + strand, within ECD_02856at 2996.708 kb on + strand, within ECD_02856at 2996.709 kb on - strand, within ECD_02856at 2996.709 kb on - strand, within ECD_02856at 2996.709 kb on - strand, within ECD_02856at 2996.709 kb on - strand, within ECD_02856at 2996.709 kb on - strand, within ECD_02856at 2996.754 kb on - strand, within ECD_02856at 2996.825 kb on + strand, within ECD_02856at 2996.825 kb on + strand, within ECD_02856at 2996.825 kb on + strand, within ECD_02856at 2996.826 kb on - strand, within ECD_02856at 2996.826 kb on - strand, within ECD_02856at 2996.858 kb on + strand, within ECD_02856at 2996.859 kb on - strand, within ECD_02856at 2997.033 kb on + strandat 2997.047 kb on + strandat 2997.048 kb on - strandat 2997.048 kb on - strandat 2997.139 kb on + strandat 2997.139 kb on + strandat 2997.561 kb on - strand, within ECD_02857at 2997.639 kb on + strandat 2997.671 kb on - strandat 2997.742 kb on + strandat 2997.743 kb on - strandat 2997.743 kb on - strandat 2997.789 kb on - strand, within ECD_02858at 2997.829 kb on - strand, within ECD_02858at 2997.867 kb on + strand, within ECD_02858at 2998.002 kb on + strand, within ECD_02858at 2998.011 kb on + strand, within ECD_02858at 2998.027 kb on - strand, within ECD_02858

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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2,995,016 + +0.8
2,995,044 + ECD_02855 0.11 -0.0
2,995,233 + ECD_02855 0.27 +0.5
2,995,234 - ECD_02855 0.27 -0.4
2,995,243 - ECD_02855 0.28 -0.1
2,995,243 - ECD_02855 0.28 +1.1
2,995,243 - ECD_02855 0.28 +0.4
2,995,243 - ECD_02855 0.28 -0.6
2,995,243 - ECD_02855 0.28 +0.0
2,995,243 - ECD_02855 0.28 -0.2
2,995,243 - ECD_02855 0.28 +0.7
2,995,287 - ECD_02855 0.32 +0.7
2,995,338 - ECD_02855 0.36 -0.2
2,995,434 + ECD_02855 0.44 +0.6
2,995,435 - ECD_02855 0.44 -0.2
2,995,435 - ECD_02855 0.44 +0.9
2,995,556 - ECD_02855 0.55 -0.0
2,995,626 - ECD_02855 0.61 -0.8
2,995,935 - ECD_02855 0.87 +0.9
2,995,976 + +1.1
2,996,154 + ECD_02856 0.15 -1.1
2,996,176 + ECD_02856 0.17 +0.1
2,996,374 + ECD_02856 0.35 +0.1
2,996,374 + ECD_02856 0.35 +0.5
2,996,374 + ECD_02856 0.35 -0.3
2,996,375 - ECD_02856 0.35 +0.2
2,996,375 - ECD_02856 0.35 +0.1
2,996,535 + ECD_02856 0.50 -0.7
2,996,562 + ECD_02856 0.53 -0.3
2,996,562 + ECD_02856 0.53 -1.2
2,996,690 + ECD_02856 0.65 +0.7
2,996,690 + ECD_02856 0.65 +0.9
2,996,708 + ECD_02856 0.66 -0.4
2,996,708 + ECD_02856 0.66 +0.4
2,996,708 + ECD_02856 0.66 +0.4
2,996,708 + ECD_02856 0.66 +1.2
2,996,708 + ECD_02856 0.66 +0.1
2,996,708 + ECD_02856 0.66 -0.7
2,996,708 + ECD_02856 0.66 +0.1
2,996,708 + ECD_02856 0.66 -0.2
2,996,709 - ECD_02856 0.67 -0.2
2,996,709 - ECD_02856 0.67 -0.0
2,996,709 - ECD_02856 0.67 +0.8
2,996,709 - ECD_02856 0.67 +0.3
2,996,709 - ECD_02856 0.67 +0.0
2,996,754 - ECD_02856 0.71 +0.5
2,996,825 + ECD_02856 0.77 -0.0
2,996,825 + ECD_02856 0.77 -0.1
2,996,825 + ECD_02856 0.77 +0.0
2,996,826 - ECD_02856 0.77 +0.1
2,996,826 - ECD_02856 0.77 -0.2
2,996,858 + ECD_02856 0.80 +0.0
2,996,859 - ECD_02856 0.81 +0.2
2,997,033 + +0.8
2,997,047 + +0.3
2,997,048 - -0.6
2,997,048 - -0.6
2,997,139 + +0.1
2,997,139 + +0.8
2,997,561 - ECD_02857 0.83 +0.7
2,997,639 + +0.4
2,997,671 - +0.1
2,997,742 + +0.6
2,997,743 - -0.1
2,997,743 - -0.5
2,997,789 - ECD_02858 0.15 +0.1
2,997,829 - ECD_02858 0.19 +0.2
2,997,867 + ECD_02858 0.24 -0.2
2,998,002 + ECD_02858 0.40 +0.2
2,998,011 + ECD_02858 0.41 -0.1
2,998,027 - ECD_02858 0.43 -0.3

Or see this region's nucleotide sequence