Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02214 and ECD_02215 are separated by 919 nucleotides ECD_02215 and ECD_02216 are separated by 83 nucleotides ECD_02216 and ECD_02217 are separated by 58 nucleotides
ECD_02214: ECD_02214 - transcriptional repressor of flagellar, motility and chemotaxis genes, at 2,292,955 to 2,293,893
_02214
ECD_02215: ECD_02215 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,294,813 to 2,296,030
_02215
ECD_02216: ECD_02216 - 5'-nucleotidase, at 2,296,114 to 2,296,713
_02216
ECD_02217: ECD_02217 - putative transporter, at 2,296,772 to 2,298,604
_02217
Position (kb)
2294
2295
2296
2297 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2293.867 kb on - strand at 2293.889 kb on - strand at 2293.896 kb on - strand at 2293.896 kb on - strand at 2293.896 kb on - strand at 2294.128 kb on + strand at 2294.154 kb on - strand at 2294.216 kb on - strand at 2294.749 kb on + strand at 2294.760 kb on - strand at 2294.855 kb on + strand at 2294.988 kb on + strand, within ECD_02215 at 2295.065 kb on + strand, within ECD_02215 at 2295.107 kb on + strand, within ECD_02215 at 2295.248 kb on + strand, within ECD_02215 at 2295.249 kb on - strand, within ECD_02215 at 2295.316 kb on + strand, within ECD_02215 at 2295.335 kb on - strand, within ECD_02215 at 2295.346 kb on + strand, within ECD_02215 at 2295.347 kb on - strand, within ECD_02215 at 2295.682 kb on - strand, within ECD_02215 at 2295.682 kb on - strand, within ECD_02215 at 2295.769 kb on + strand, within ECD_02215 at 2295.809 kb on + strand, within ECD_02215 at 2295.809 kb on + strand, within ECD_02215 at 2295.810 kb on - strand, within ECD_02215 at 2295.811 kb on + strand, within ECD_02215 at 2295.811 kb on + strand, within ECD_02215 at 2295.811 kb on + strand, within ECD_02215 at 2295.811 kb on + strand, within ECD_02215 at 2295.811 kb on + strand, within ECD_02215 at 2295.812 kb on - strand, within ECD_02215 at 2295.974 kb on - strand at 2296.100 kb on + strand at 2296.100 kb on + strand at 2296.101 kb on - strand at 2296.104 kb on + strand at 2296.104 kb on + strand at 2296.105 kb on - strand at 2296.251 kb on + strand, within ECD_02216 at 2296.391 kb on - strand, within ECD_02216 at 2296.456 kb on - strand, within ECD_02216 at 2296.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,293,867 - +0.2 2,293,889 - -0.6 2,293,896 - +0.1 2,293,896 - +0.7 2,293,896 - -0.4 2,294,128 + +0.8 2,294,154 - -0.6 2,294,216 - -2.6 2,294,749 + +0.5 2,294,760 - -0.3 2,294,855 + +0.5 2,294,988 + ECD_02215 0.14 -0.2 2,295,065 + ECD_02215 0.21 +0.4 2,295,107 + ECD_02215 0.24 +0.4 2,295,248 + ECD_02215 0.36 +0.1 2,295,249 - ECD_02215 0.36 +1.9 2,295,316 + ECD_02215 0.41 +0.7 2,295,335 - ECD_02215 0.43 +0.2 2,295,346 + ECD_02215 0.44 +0.6 2,295,347 - ECD_02215 0.44 +0.1 2,295,682 - ECD_02215 0.71 +0.4 2,295,682 - ECD_02215 0.71 +0.1 2,295,769 + ECD_02215 0.78 -0.0 2,295,809 + ECD_02215 0.82 +0.8 2,295,809 + ECD_02215 0.82 +0.3 2,295,810 - ECD_02215 0.82 -0.2 2,295,811 + ECD_02215 0.82 -0.1 2,295,811 + ECD_02215 0.82 -0.3 2,295,811 + ECD_02215 0.82 +0.5 2,295,811 + ECD_02215 0.82 +0.4 2,295,811 + ECD_02215 0.82 +0.1 2,295,812 - ECD_02215 0.82 +1.4 2,295,974 - -0.3 2,296,100 + +0.9 2,296,100 + +0.2 2,296,101 - +0.9 2,296,104 + -0.8 2,296,104 + +0.1 2,296,105 - +0.2 2,296,251 + ECD_02216 0.23 -0.1 2,296,391 - ECD_02216 0.46 +0.2 2,296,456 - ECD_02216 0.57 -0.2 2,296,655 + +0.3
Or see this region's nucleotide sequence