Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02189 and ECD_02190 are separated by 14 nucleotides ECD_02190 and ECD_02191 overlap by 4 nucleotides ECD_02191 and ECD_02192 are separated by 88 nucleotides
ECD_02189: ECD_02189 - dihydroxynaphthoic acid synthetase, at 2,266,136 to 2,266,993
_02189
ECD_02190: ECD_02190 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,267,008 to 2,267,766
_02190
ECD_02191: ECD_02191 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase, at 2,267,763 to 2,269,433
_02191
ECD_02192: ECD_02192 - isochorismate synthase 2, at 2,269,522 to 2,270,817
_02192
Position (kb)
2267
2268
2269
2270 Strain fitness (log2 ratio)
-1
0
1
2 at 2267.195 kb on - strand, within ECD_02190 at 2267.559 kb on + strand, within ECD_02190 at 2267.598 kb on + strand, within ECD_02190 at 2267.636 kb on + strand, within ECD_02190 at 2267.637 kb on - strand, within ECD_02190 at 2267.637 kb on - strand, within ECD_02190 at 2267.637 kb on - strand, within ECD_02190 at 2267.637 kb on - strand, within ECD_02190 at 2267.767 kb on - strand at 2268.095 kb on - strand, within ECD_02191 at 2268.206 kb on - strand, within ECD_02191 at 2268.267 kb on - strand, within ECD_02191 at 2268.446 kb on + strand, within ECD_02191 at 2268.884 kb on + strand, within ECD_02191 at 2268.885 kb on - strand, within ECD_02191 at 2268.885 kb on - strand, within ECD_02191 at 2268.911 kb on - strand, within ECD_02191 at 2269.102 kb on - strand, within ECD_02191 at 2269.331 kb on + strand at 2269.416 kb on - strand at 2269.426 kb on - strand at 2269.426 kb on - strand at 2269.461 kb on + strand at 2269.466 kb on - strand at 2269.468 kb on - strand at 2269.468 kb on - strand at 2269.484 kb on - strand at 2269.624 kb on + strand at 2269.624 kb on + strand at 2269.624 kb on + strand at 2269.811 kb on - strand, within ECD_02192 at 2269.931 kb on - strand, within ECD_02192 at 2270.006 kb on - strand, within ECD_02192 at 2270.035 kb on - strand, within ECD_02192
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,267,195 - ECD_02190 0.25 -0.1 2,267,559 + ECD_02190 0.73 +0.8 2,267,598 + ECD_02190 0.78 +0.6 2,267,636 + ECD_02190 0.83 +0.0 2,267,637 - ECD_02190 0.83 +0.4 2,267,637 - ECD_02190 0.83 -0.1 2,267,637 - ECD_02190 0.83 +1.4 2,267,637 - ECD_02190 0.83 -0.8 2,267,767 - +1.0 2,268,095 - ECD_02191 0.20 +0.4 2,268,206 - ECD_02191 0.27 +0.7 2,268,267 - ECD_02191 0.30 +0.7 2,268,446 + ECD_02191 0.41 -0.1 2,268,884 + ECD_02191 0.67 -0.5 2,268,885 - ECD_02191 0.67 -0.3 2,268,885 - ECD_02191 0.67 -0.2 2,268,911 - ECD_02191 0.69 +0.8 2,269,102 - ECD_02191 0.80 -1.1 2,269,331 + -0.4 2,269,416 - +2.0 2,269,426 - +0.0 2,269,426 - +0.4 2,269,461 + -1.4 2,269,466 - -0.6 2,269,468 - +0.1 2,269,468 - -0.0 2,269,484 - -0.1 2,269,624 + -0.1 2,269,624 + -0.7 2,269,624 + +0.1 2,269,811 - ECD_02192 0.22 -1.0 2,269,931 - ECD_02192 0.32 -0.5 2,270,006 - ECD_02192 0.37 +0.2 2,270,035 - ECD_02192 0.40 +0.2
Or see this region's nucleotide sequence