Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02151 and ECD_02152 are separated by 73 nucleotides ECD_02152 and ECD_02153 are separated by 4 nucleotides ECD_02153 and ECD_02154 are separated by 0 nucleotides
ECD_02151: ECD_02151 - acetyl-CoA acetyltransferase, at 2,216,470 to 2,217,654
_02151
ECD_02152: ECD_02152 - DUF2135 family protein, putative host defense protein, at 2,217,728 to 2,218,504
_02152
ECD_02153: ECD_02153 - tandem DUF2300 domain protein, putative host defense protein, at 2,218,509 to 2,220,158
_02153
ECD_02154: ECD_02154 - putative membrane protein, at 2,220,159 to 2,224,763
_02154
Position (kb)
2218
2219
2220
2221 Strain fitness (log2 ratio)
-1
0
1 at 2217.557 kb on + strand at 2217.557 kb on + strand at 2217.653 kb on - strand at 2217.770 kb on - strand at 2217.784 kb on + strand at 2217.785 kb on - strand at 2217.785 kb on - strand at 2217.874 kb on - strand, within ECD_02152 at 2217.877 kb on - strand, within ECD_02152 at 2217.886 kb on - strand, within ECD_02152 at 2217.886 kb on - strand, within ECD_02152 at 2217.997 kb on - strand, within ECD_02152 at 2218.357 kb on - strand, within ECD_02152 at 2218.546 kb on + strand at 2218.671 kb on - strand at 2218.690 kb on - strand, within ECD_02153 at 2218.740 kb on + strand, within ECD_02153 at 2218.745 kb on + strand, within ECD_02153 at 2218.797 kb on + strand, within ECD_02153 at 2218.798 kb on - strand, within ECD_02153 at 2218.874 kb on - strand, within ECD_02153 at 2218.948 kb on + strand, within ECD_02153 at 2218.969 kb on + strand, within ECD_02153 at 2218.969 kb on + strand, within ECD_02153 at 2219.182 kb on + strand, within ECD_02153 at 2219.235 kb on + strand, within ECD_02153 at 2219.282 kb on + strand, within ECD_02153 at 2219.307 kb on - strand, within ECD_02153 at 2219.683 kb on - strand, within ECD_02153 at 2219.801 kb on + strand, within ECD_02153 at 2219.824 kb on + strand, within ECD_02153 at 2219.888 kb on - strand, within ECD_02153 at 2219.888 kb on - strand, within ECD_02153 at 2220.009 kb on + strand at 2220.050 kb on - strand at 2220.087 kb on + strand at 2220.088 kb on - strand at 2220.160 kb on + strand at 2220.221 kb on - strand at 2220.326 kb on + strand at 2220.327 kb on - strand at 2220.328 kb on + strand at 2220.329 kb on - strand at 2220.518 kb on - strand at 2220.563 kb on + strand at 2220.599 kb on - strand at 2220.599 kb on - strand at 2220.688 kb on - strand, within ECD_02154 at 2220.764 kb on + strand, within ECD_02154 at 2220.823 kb on + strand, within ECD_02154 at 2220.824 kb on - strand, within ECD_02154 at 2220.824 kb on - strand, within ECD_02154 at 2220.889 kb on - strand, within ECD_02154 at 2220.923 kb on + strand, within ECD_02154 at 2220.986 kb on - strand, within ECD_02154
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,217,557 + -0.3 2,217,557 + -0.4 2,217,653 - +0.7 2,217,770 - +0.2 2,217,784 + +0.5 2,217,785 - +0.3 2,217,785 - -1.3 2,217,874 - ECD_02152 0.19 +0.2 2,217,877 - ECD_02152 0.19 +1.4 2,217,886 - ECD_02152 0.20 -0.1 2,217,886 - ECD_02152 0.20 +0.4 2,217,997 - ECD_02152 0.35 +1.0 2,218,357 - ECD_02152 0.81 -0.9 2,218,546 + +0.2 2,218,671 - +0.2 2,218,690 - ECD_02153 0.11 +0.7 2,218,740 + ECD_02153 0.14 +1.0 2,218,745 + ECD_02153 0.14 +0.4 2,218,797 + ECD_02153 0.17 +0.1 2,218,798 - ECD_02153 0.18 +1.0 2,218,874 - ECD_02153 0.22 +0.3 2,218,948 + ECD_02153 0.27 +0.2 2,218,969 + ECD_02153 0.28 +0.5 2,218,969 + ECD_02153 0.28 -0.1 2,219,182 + ECD_02153 0.41 +0.0 2,219,235 + ECD_02153 0.44 +0.5 2,219,282 + ECD_02153 0.47 -0.6 2,219,307 - ECD_02153 0.48 -0.7 2,219,683 - ECD_02153 0.71 +0.4 2,219,801 + ECD_02153 0.78 -0.1 2,219,824 + ECD_02153 0.80 +1.0 2,219,888 - ECD_02153 0.84 +0.8 2,219,888 - ECD_02153 0.84 +0.4 2,220,009 + -1.2 2,220,050 - +0.1 2,220,087 + -0.1 2,220,088 - +0.2 2,220,160 + +0.0 2,220,221 - -0.3 2,220,326 + +1.5 2,220,327 - +0.2 2,220,328 + -0.5 2,220,329 - +0.4 2,220,518 - -0.4 2,220,563 + +0.7 2,220,599 - -0.1 2,220,599 - +0.5 2,220,688 - ECD_02154 0.11 -0.1 2,220,764 + ECD_02154 0.13 -1.5 2,220,823 + ECD_02154 0.14 +0.8 2,220,824 - ECD_02154 0.14 +0.3 2,220,824 - ECD_02154 0.14 +0.1 2,220,889 - ECD_02154 0.16 -0.5 2,220,923 + ECD_02154 0.17 +1.0 2,220,986 - ECD_02154 0.18 +0.3
Or see this region's nucleotide sequence