Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02120 and ECD_02121 are separated by 210 nucleotides ECD_02121 and ECD_02122 overlap by 4 nucleotides ECD_02122 and ECD_02123 overlap by 4 nucleotides
ECD_02120: ECD_02120 - response regulator in two-component regulatory system with NarQ, at 2,184,150 to 2,184,797
_02120
ECD_02121: ECD_02121 - heme lyase, CcmH subunit, at 2,185,008 to 2,186,060
_02121
ECD_02122: ECD_02122 - periplasmic thioredoxin of cytochrome c-type biogenesis, at 2,186,057 to 2,186,614
_02122
ECD_02123: ECD_02123 - heme lyase, CcmF subunit, at 2,186,611 to 2,188,554
_02123
Position (kb)
2185
2186
2187 Strain fitness (log2 ratio)
-1
0
1 at 2184.059 kb on + strand at 2184.146 kb on + strand at 2184.146 kb on + strand at 2184.146 kb on + strand at 2184.149 kb on + strand at 2184.223 kb on + strand, within ECD_02120 at 2184.465 kb on + strand, within ECD_02120 at 2184.562 kb on + strand, within ECD_02120 at 2184.709 kb on + strand, within ECD_02120 at 2184.713 kb on + strand, within ECD_02120 at 2184.796 kb on - strand at 2184.815 kb on + strand at 2185.013 kb on + strand at 2185.055 kb on + strand at 2185.166 kb on - strand, within ECD_02121 at 2185.174 kb on - strand, within ECD_02121 at 2185.174 kb on - strand, within ECD_02121 at 2185.328 kb on - strand, within ECD_02121 at 2185.347 kb on - strand, within ECD_02121 at 2185.383 kb on - strand, within ECD_02121 at 2185.383 kb on - strand, within ECD_02121 at 2185.383 kb on - strand, within ECD_02121 at 2185.396 kb on - strand, within ECD_02121 at 2185.397 kb on + strand, within ECD_02121 at 2185.397 kb on + strand, within ECD_02121 at 2185.549 kb on + strand, within ECD_02121 at 2185.568 kb on - strand, within ECD_02121 at 2185.620 kb on - strand, within ECD_02121 at 2185.702 kb on + strand, within ECD_02121 at 2185.703 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.705 kb on - strand, within ECD_02121 at 2185.728 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.815 kb on - strand, within ECD_02121 at 2185.817 kb on - strand, within ECD_02121 at 2185.817 kb on - strand, within ECD_02121 at 2186.080 kb on - strand at 2186.300 kb on - strand, within ECD_02122 at 2186.301 kb on + strand, within ECD_02122 at 2186.601 kb on - strand at 2186.859 kb on - strand, within ECD_02123 at 2186.874 kb on - strand, within ECD_02123 at 2187.036 kb on - strand, within ECD_02123 at 2187.036 kb on - strand, within ECD_02123
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,184,059 + -0.2 2,184,146 + -0.1 2,184,146 + +0.3 2,184,146 + +0.2 2,184,149 + -0.4 2,184,223 + ECD_02120 0.11 +0.4 2,184,465 + ECD_02120 0.49 +0.2 2,184,562 + ECD_02120 0.64 -0.2 2,184,709 + ECD_02120 0.86 +0.3 2,184,713 + ECD_02120 0.87 +1.3 2,184,796 - -0.4 2,184,815 + -0.5 2,185,013 + +0.1 2,185,055 + -0.0 2,185,166 - ECD_02121 0.15 +0.7 2,185,174 - ECD_02121 0.16 +0.3 2,185,174 - ECD_02121 0.16 -0.4 2,185,328 - ECD_02121 0.30 +0.6 2,185,347 - ECD_02121 0.32 +0.2 2,185,383 - ECD_02121 0.36 -0.5 2,185,383 - ECD_02121 0.36 +0.8 2,185,383 - ECD_02121 0.36 -0.6 2,185,396 - ECD_02121 0.37 +0.0 2,185,397 + ECD_02121 0.37 +0.3 2,185,397 + ECD_02121 0.37 +0.2 2,185,549 + ECD_02121 0.51 -1.2 2,185,568 - ECD_02121 0.53 +0.3 2,185,620 - ECD_02121 0.58 +0.6 2,185,702 + ECD_02121 0.66 -0.1 2,185,703 - ECD_02121 0.66 +0.2 2,185,705 - ECD_02121 0.66 -0.7 2,185,705 - ECD_02121 0.66 -0.2 2,185,705 - ECD_02121 0.66 +0.5 2,185,728 - ECD_02121 0.68 +0.4 2,185,815 - ECD_02121 0.77 +0.0 2,185,815 - ECD_02121 0.77 -0.2 2,185,815 - ECD_02121 0.77 +0.5 2,185,815 - ECD_02121 0.77 +0.8 2,185,817 - ECD_02121 0.77 +0.0 2,185,817 - ECD_02121 0.77 +0.1 2,186,080 - -0.5 2,186,300 - ECD_02122 0.44 +0.4 2,186,301 + ECD_02122 0.44 +0.0 2,186,601 - +0.7 2,186,859 - ECD_02123 0.13 +1.4 2,186,874 - ECD_02123 0.14 -0.3 2,187,036 - ECD_02123 0.22 +0.6 2,187,036 - ECD_02123 0.22 +0.5
Or see this region's nucleotide sequence