Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01913 and ECD_01914 are separated by 208 nucleotides ECD_01914 and ECD_01915 are separated by 42 nucleotides ECD_01915 and ECD_01916 are separated by 13 nucleotides
ECD_01913: ECD_01913 - D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6b, at 1,977,625 to 1,978,791
_01913
ECD_01914: ECD_01914 - exodeoxyribonuclease I; exonuclease I, at 1,979,000 to 1,980,427
_01914
ECD_01915: ECD_01915 - putative TusA family sulfurtransferase, at 1,980,470 to 1,980,697
_01915
ECD_01916: ECD_01916 - UPF0394 family inner membrane protein, at 1,980,711 to 1,981,769
_01916
Position (kb)
1978
1979
1980
1981 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1978.087 kb on - strand, within ECD_01913 at 1978.187 kb on + strand, within ECD_01913 at 1978.188 kb on - strand, within ECD_01913 at 1978.188 kb on - strand, within ECD_01913 at 1978.248 kb on - strand, within ECD_01913 at 1978.257 kb on + strand, within ECD_01913 at 1978.580 kb on + strand, within ECD_01913 at 1978.581 kb on - strand, within ECD_01913 at 1979.353 kb on + strand, within ECD_01914 at 1979.432 kb on + strand, within ECD_01914 at 1979.974 kb on + strand, within ECD_01914 at 1980.103 kb on + strand, within ECD_01914 at 1980.103 kb on + strand, within ECD_01914 at 1980.103 kb on + strand, within ECD_01914 at 1980.260 kb on + strand, within ECD_01914 at 1980.597 kb on - strand, within ECD_01915 at 1980.645 kb on - strand, within ECD_01915 at 1980.702 kb on - strand at 1980.709 kb on - strand at 1980.713 kb on - strand at 1980.761 kb on - strand at 1980.761 kb on - strand at 1980.802 kb on - strand at 1980.901 kb on - strand, within ECD_01916 at 1980.922 kb on - strand, within ECD_01916 at 1980.922 kb on - strand, within ECD_01916 at 1981.026 kb on - strand, within ECD_01916 at 1981.101 kb on - strand, within ECD_01916 at 1981.338 kb on - strand, within ECD_01916 at 1981.344 kb on - strand, within ECD_01916 at 1981.344 kb on - strand, within ECD_01916 at 1981.422 kb on - strand, within ECD_01916 at 1981.422 kb on - strand, within ECD_01916 at 1981.422 kb on - strand, within ECD_01916
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,978,087 - ECD_01913 0.40 +1.1 1,978,187 + ECD_01913 0.48 +0.0 1,978,188 - ECD_01913 0.48 +0.5 1,978,188 - ECD_01913 0.48 +0.6 1,978,248 - ECD_01913 0.53 -0.7 1,978,257 + ECD_01913 0.54 +0.9 1,978,580 + ECD_01913 0.82 +0.4 1,978,581 - ECD_01913 0.82 +2.9 1,979,353 + ECD_01914 0.25 +1.9 1,979,432 + ECD_01914 0.30 -0.1 1,979,974 + ECD_01914 0.68 -0.7 1,980,103 + ECD_01914 0.77 +0.7 1,980,103 + ECD_01914 0.77 +0.4 1,980,103 + ECD_01914 0.77 -0.2 1,980,260 + ECD_01914 0.88 +1.3 1,980,597 - ECD_01915 0.56 -0.4 1,980,645 - ECD_01915 0.77 -0.5 1,980,702 - +0.1 1,980,709 - -0.1 1,980,713 - +0.9 1,980,761 - -0.6 1,980,761 - +0.4 1,980,802 - -0.8 1,980,901 - ECD_01916 0.18 +0.1 1,980,922 - ECD_01916 0.20 -0.5 1,980,922 - ECD_01916 0.20 -0.1 1,981,026 - ECD_01916 0.30 +0.7 1,981,101 - ECD_01916 0.37 -0.1 1,981,338 - ECD_01916 0.59 -0.1 1,981,344 - ECD_01916 0.60 +0.5 1,981,344 - ECD_01916 0.60 -0.5 1,981,422 - ECD_01916 0.67 -0.1 1,981,422 - ECD_01916 0.67 +0.0 1,981,422 - ECD_01916 0.67 -0.0
Or see this region's nucleotide sequence