Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01865 and ECD_01866 overlap by 26 nucleotides ECD_01866 and ECD_01867 are separated by 166 nucleotides ECD_01867 and ECD_01868 are separated by 14 nucleotides
ECD_01865: ECD_01865 - trehalose-6-phosphate synthase, at 1,925,330 to 1,926,754
_01865
ECD_01866: ECD_01866 - trehalose-6-phosphate phosphatase, biosynthetic, at 1,926,729 to 1,927,529
_01866
ECD_01867: ECD_01867 - L-arabinose ABC transporter permease, at 1,927,696 to 1,928,682
_01867
ECD_01868: ECD_01868 - L-arabinose ABC transporter ATPase, at 1,928,697 to 1,930,211
_01868
Position (kb)
1927
1928
1929 Strain fitness (log2 ratio)
-1
0
1
2 at 1926.755 kb on - strand at 1927.102 kb on - strand, within ECD_01866 at 1927.247 kb on + strand, within ECD_01866 at 1927.248 kb on - strand, within ECD_01866 at 1927.248 kb on - strand, within ECD_01866 at 1927.395 kb on + strand, within ECD_01866 at 1927.410 kb on - strand, within ECD_01866 at 1927.588 kb on + strand at 1927.588 kb on + strand at 1927.588 kb on + strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.773 kb on - strand at 1927.773 kb on - strand at 1928.088 kb on + strand, within ECD_01867 at 1928.296 kb on + strand, within ECD_01867 at 1928.646 kb on + strand at 1928.647 kb on - strand at 1928.895 kb on - strand, within ECD_01868 at 1928.895 kb on - strand, within ECD_01868 at 1929.106 kb on - strand, within ECD_01868 at 1929.128 kb on + strand, within ECD_01868 at 1929.243 kb on - strand, within ECD_01868 at 1929.387 kb on + strand, within ECD_01868 at 1929.550 kb on + strand, within ECD_01868 at 1929.619 kb on + strand, within ECD_01868 at 1929.622 kb on - strand, within ECD_01868
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,926,755 - -0.1 1,927,102 - ECD_01866 0.47 -0.5 1,927,247 + ECD_01866 0.65 +0.6 1,927,248 - ECD_01866 0.65 -1.1 1,927,248 - ECD_01866 0.65 -0.4 1,927,395 + ECD_01866 0.83 -0.9 1,927,410 - ECD_01866 0.85 -0.1 1,927,588 + +0.2 1,927,588 + +1.0 1,927,588 + +0.9 1,927,589 - -0.4 1,927,589 - -1.1 1,927,589 - +1.1 1,927,589 - +0.3 1,927,589 - +0.1 1,927,589 - +0.7 1,927,773 - +1.9 1,927,773 - -0.0 1,928,088 + ECD_01867 0.40 +0.5 1,928,296 + ECD_01867 0.61 +1.9 1,928,646 + +0.9 1,928,647 - -0.5 1,928,895 - ECD_01868 0.13 +0.9 1,928,895 - ECD_01868 0.13 -0.2 1,929,106 - ECD_01868 0.27 +0.1 1,929,128 + ECD_01868 0.28 -1.0 1,929,243 - ECD_01868 0.36 -0.5 1,929,387 + ECD_01868 0.46 -1.1 1,929,550 + ECD_01868 0.56 -0.7 1,929,619 + ECD_01868 0.61 +0.2 1,929,622 - ECD_01868 0.61 +0.4
Or see this region's nucleotide sequence